Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28837 109 8e-19 seq24802 105 9e-18 >seq28837 Length=2583 Score = 109 bits (120), Expect = 8e-19 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 |||||||| || || || |||| ||||||| || ||||| || |||| |||| Sbjct 383 ATCTGAAAGCCATAGAAGCATCGGGCTTCTGCCGCTTGAACCTCTCCACTGAATCTTTCA 442 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| ||||| || || |||||||| |||||| || || ||||| || ||||| ||| Sbjct 443 ATCAAGTTCTCGTTGACGATTCCATCTGAAGCAGCGAAGAAAGCTAAGACGTGTTTGATA 502 Query 48582 AAATATTTTTCGTTGGAAGTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCT 48638 || | ||| |||| ||| | ||| || || | ||||||||||| | ||| Sbjct 503 AAGTGTTTCTCGTCATCGTTCAACCTGTTCTCCCAATCGTGCATATCTTTTGAAAGATCA 562 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 | ||||||||||||||||| || ||||| ||| ||||| Sbjct 563 ATCTCTTCAGCTGTCCAAAACGAAGCCTCGGCTCGCTTATA 603 >seq24802 Length=2283 Score = 105 bits (116), Expect = 9e-18 Identities = 399/619 (64%), Gaps = 8/619 (1%) Strand=Plus/Plus Query 77168 GGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCAT 77227 ||| || || || | | |||| ||| |||| || ||| || |||||||| ||||| Sbjct 1555 GGTGTACGGCTCAAAACATTCGTTGAAGCCCATGATCTGACTGGTCGAAGCAGTAGGCAT 1614 Query 77228 AGGTGCCACCAATAAACTATTTC-TGAGACCATGTGTTCT-GATTTTATCTTTTAGATAT 77285 || || | ||| || | | ||| | | ||| ||| || ||| || ||||| |||| Sbjct 1615 TGGCGCAAGCAA-AAGCGAGTTCCTCAATCCA-GTGGCCTTGATCTTTTCTTTCAGATCA 1672 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 | ||| | ||| || || || ||| ||| |||| | ||| ||||| || ||| | Sbjct 1673 TCCCATTTCCACAGGTCGGAGGGTGTAACGCCCCACATATCATATTGGAGTTCTCCTAAA 1732 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTC 77405 ||||| || || | | ||||| || | ||||| | | || || || Sbjct 1733 CTAGCGGGCGAACCGGGAAACGTTTCGTATGCGCCTTCCGACACGGCAAGCTCGTTTGAG 1792 Query 77406 GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCA 77465 ||||| | ||| ||| ||| | || ||||| |||| ||| | | || ||||| Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852 Query 77466 ATACTATCAAACGGATAATGTAAAAGAAT--AAAGGCATCTGCTAATCCCTGAACTCCAA 77523 ||| || ||| | | |||| | |||||||||||||||||| | ||||| | Sbjct 1853 GGTGAATCGAATGGA--AGCTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCGA 1910 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 | || || || | ||||||| | ||||| ||||||||||||| | || || ||||| | Sbjct 1911 TTCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCTTCTGGGACGGGGTAGTAATTCA 1970 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||||| || ||| | || | ||| | || ||| || | ||| || | | Sbjct 1971 CATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTGGA 2030 Query 77644 AATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTG 77703 ||||| | ||| || | | | || | || || || || || || |||||||| | Sbjct 2031 AATCATAGACTCCGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTACAAACCG 2090 Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 | ||||||| | | | ||| | || ||||| ||||| || || | ||||| | Sbjct 2091 CCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGACTTGATGG 2150 Query 77764 TGCCCAGATTTTGTTGGTT 77782 |||| || || | ||| || Sbjct 2151 TGCCAAGGTTCTTTTGATT 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694415028804000