Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq28837 109 8e-19
seq24802 105 9e-18
>seq28837
Length=2583
Score = 109 bits (120), Expect = 8e-19
Identities = 157/221 (71%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521
|||||||| || || || |||| ||||||| || ||||| || |||| ||||
Sbjct 383 ATCTGAAAGCCATAGAAGCATCGGGCTTCTGCCGCTTGAACCTCTCCACTGAATCTTTCA 442
Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581
||| ||||| || || |||||||| |||||| || || ||||| || ||||| |||
Sbjct 443 ATCAAGTTCTCGTTGACGATTCCATCTGAAGCAGCGAAGAAAGCTAAGACGTGTTTGATA 502
Query 48582 AAATATTTTTCGTTGGAAGTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCT 48638
|| | ||| |||| ||| | ||| || || | ||||||||||| | |||
Sbjct 503 AAGTGTTTCTCGTCATCGTTCAACCTGTTCTCCCAATCGTGCATATCTTTTGAAAGATCA 562
Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679
| ||||||||||||||||| || ||||| ||| |||||
Sbjct 563 ATCTCTTCAGCTGTCCAAAACGAAGCCTCGGCTCGCTTATA 603
>seq24802
Length=2283
Score = 105 bits (116), Expect = 9e-18
Identities = 399/619 (64%), Gaps = 8/619 (1%)
Strand=Plus/Plus
Query 77168 GGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCAT 77227
||| || || || | | |||| ||| |||| || ||| || |||||||| |||||
Sbjct 1555 GGTGTACGGCTCAAAACATTCGTTGAAGCCCATGATCTGACTGGTCGAAGCAGTAGGCAT 1614
Query 77228 AGGTGCCACCAATAAACTATTTC-TGAGACCATGTGTTCT-GATTTTATCTTTTAGATAT 77285
|| || | ||| || | | ||| | | ||| ||| || ||| || ||||| ||||
Sbjct 1615 TGGCGCAAGCAA-AAGCGAGTTCCTCAATCCA-GTGGCCTTGATCTTTTCTTTCAGATCA 1672
Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345
| ||| | ||| || || || ||| ||| |||| | ||| ||||| || ||| |
Sbjct 1673 TCCCATTTCCACAGGTCGGAGGGTGTAACGCCCCACATATCATATTGGAGTTCTCCTAAA 1732
Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTC 77405
||||| || || | | ||||| || | ||||| | | || || ||
Sbjct 1733 CTAGCGGGCGAACCGGGAAACGTTTCGTATGCGCCTTCCGACACGGCAAGCTCGTTTGAG 1792
Query 77406 GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCA 77465
||||| | ||| ||| ||| | || ||||| |||| ||| | | || |||||
Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852
Query 77466 ATACTATCAAACGGATAATGTAAAAGAAT--AAAGGCATCTGCTAATCCCTGAACTCCAA 77523
||| || ||| | | |||| | |||||||||||||||||| | ||||| |
Sbjct 1853 GGTGAATCGAATGGA--AGCTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCGA 1910
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
| || || || | ||||||| | ||||| ||||||||||||| | || || ||||| |
Sbjct 1911 TTCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCTTCTGGGACGGGGTAGTAATTCA 1970
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
||||| || ||| | || | ||| | || ||| || | ||| || | |
Sbjct 1971 CATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTGGA 2030
Query 77644 AATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTG 77703
||||| | ||| || | | | || | || || || || || || |||||||| |
Sbjct 2031 AATCATAGACTCCGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTACAAACCG 2090
Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763
| ||||||| | | | ||| | || ||||| ||||| || || | ||||| |
Sbjct 2091 CCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGACTTGATGG 2150
Query 77764 TGCCCAGATTTTGTTGGTT 77782
|||| || || | ||| ||
Sbjct 2151 TGCCAAGGTTCTTTTGATT 2169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694415028804000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |