Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq16220 140 7e-28 seq25279 89.7 1e-12 >seq16220 Length=1922 Score = 140 bits (154), Expect = 7e-28 Identities = 125/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 282919 TGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTT 282978 ||||||| |||||||| || || || || || |||||||| ||||| ||||||||||||| Sbjct 1 TGTTGTAATCAGCAAGGGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTT 60 Query 282979 GTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGT 283038 |||| || |||||||| || || ||||||||||| || || ||| | || || || | Sbjct 61 GTTGATCCGGTGGAATACCTTCTTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTAT 120 Query 283039 CCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | |||| |||||| ||||| ||||| ||||| || || Sbjct 121 CGGAAGATTCGACCTCGAGGGTGATAGTCTTCCCGGT 157 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||||||||| || || ||||||||||| || ||||| ||||| ||| | Sbjct 400 ATCAAACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTG 459 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| |||| ||| || ||||| ||||| || || || || Sbjct 460 TCGATGGTGTCAGAAGATTCAACCTCGAGGGTGATGGTTTTGCCGGT 506 >seq25279 Length=2861 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | ||||||||||| ||||| || ||||| ||||| ||||| | || || Sbjct 2147 AGATGAGTCGTTGTTGGTCCGGGGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 2088 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || ||||| | ||||||||| ||||||||||| ||||||||||| Sbjct 2087 TGTCAATTGTGTCGGCAGCTTCGACCTCGAGAGTGATAGTCTTACCCGT 2039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046347253413150