Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq16220 127 5e-24 >seq16220 Length=1922 Score = 127 bits (140), Expect = 5e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || || || || |||||||||||||| ||| || || ||||| || |||||||| Sbjct 161 TCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGATACCATTGACAACGTCAA 102 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| || || |||||||| || || ||||| || ||||| | ||||||||||| Sbjct 101 GGCCAAGATCCAAGATAAAGAAGGTATTCCACCGGATCAACAACGTTTGATCTTCGCCGG 42 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 |||||| || ||||| ||| | || ||||| ||||| ||| Sbjct 41 AAAACAACTTGAAGACGGACGTACCCTTGCTGATTACAAC 2 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || ||||| |||||||||||||| ||| || ||||||||||| |||||||| Sbjct 510 TCTCACCGGCAAAACCATCACCCTCGAGGTTGAATCTTCTGACACCATCGACAACGTCAA 451 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 450 AGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAACAACG 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203280468494650