Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq15554 134 1e-26 >seq15554 Length=1095 Score = 134 bits (148), Expect = 1e-26 Identities = 239/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 ||||||||||||| || | ||||||||| || | ||||||||| | || ||| | Sbjct 23 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 82 Query 101927 TTCCAAGCACACATTAACATCCTTCT---ATCTGTAGGGTTTGTTTTTATAGTATCAATC 101983 |||||||||| |||| || |||| ||| || || || || || | | ||| Sbjct 83 TTCCAAGCAC---TTAAAATAATTCTACGATCAGTTGGATTAAATTGAATTTTTTGAATA 139 Query 101984 AACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCT 102043 | | ||||||||| |||| |||| | | |||||| || | |||||||||| Sbjct 140 CAATCTTTTAATTGATCAAAACCTTTTTGATAATAATCATCTTTAAAAGTTTTATATTCT 199 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || || ||||| ||||| ||||||||||| | ||||| | ||||||||| ||| || Sbjct 200 GCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAAATCTCCTTCTGATCTTTCT 259 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCA 102163 || |||| ||| |||| | | |||||||||| ||| |||||| | || || Sbjct 260 GTTAATCCAATACTATTTAAATAAGTCTTAGATCCATTTCCATTCCAAATATTTACTCCT 319 Query 102164 GCTGCTGATAGCTCT-TTGCTGTCAGTAGATCCTCTGATAAACCA 102207 || ||||| ||| || || ||| |||||| | |||||||| Sbjct 320 TTTGATGATAATTCTAATGATG-AAGTTGATCCTTTTATAAACCA 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361143442718225