Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12187 98.7 1e-15 >seq12187 Length=3801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 219/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 ||||||||| ||| |||||| || |||| || || ||||||||||| | || Sbjct 3449 GCTTCCAGGGAATCGAATGGAAGCTTCAAGATTTGGAAGGCATCTGCTAATCCGTTTACT 3390 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 53605 || || ||||| || | ||||||| | || || ||| |||||| || | || || ||| Sbjct 3389 CCGATTCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCTTCAGGGACGGGGTAGTAA 3330 Query 53606 TTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGT 53662 || | ||| || || ||| | ||| | |||| || ||||| ||| || | || Sbjct 3329 TTCACATCAATTATACGATTCAAGTTCCACGTGAC--TTCCTTTG-TCACCTCGTGTAGC 3273 Query 53663 TTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTA 53722 || | |||||| | ||| || | | | || | || || || || ||||| || Sbjct 3272 TTTTGGAAATCATAGACTCCGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTG 3213 Query 53723 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 53782 ||||| || ||||||| | | | ||| | || |||||||||||||| || || Sbjct 3212 CAAACCGCCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTGCAAAGGTTTGATGAC 3153 Query 53783 TTGATGGTTCCTAAATTTTGTTGATT 53808 |||||||| || | || | |||||| Sbjct 3152 TTGATGGTACCAAGGTTCTTTTGATT 3127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593539958298000