Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13424 104 2e-17 seq4231 96.9 4e-15 >seq13424 Length=872 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || || |||||||| ||||| | || |||||| || |||||| | | | ||||| Sbjct 772 CTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAG 713 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | ||||||| ||||| || || ||||| | || || ||||| | |||| || || Sbjct 712 GCCAAAATTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGGA 653 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || ||||| |||| ||||| ||| || ||||||||||||||||| | || || Sbjct 652 AAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCTC 593 Query 40891 CATCTAGTGTTGCGCTT 40907 ||||| ||| | || || Sbjct 592 CATCTTGTGCTCCGTTT 576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || |||||||||||| | || ||||| | | |||| | | |||| |||| Sbjct 485 CTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACG-TCAA 427 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || |||| || || || || || ||| | ||||| || ||||| |||| || || Sbjct 426 AGCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGG 367 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| ||||| || | || || || || ||||||||||| |||||| | || || Sbjct 366 TAAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCT 307 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| | || ||||| ||| | || || Sbjct 306 TCATTTGGTATTGCGATTGCGCGGAGG 280 >seq4231 Length=3588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 116657 GCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG 116716 |||||||| || || ||||| | || ||| | || || || ||||| | | || ||| Sbjct 1422 GCCGAGGCTTCCTTTTGGACAGCTGAAGAGATCGATCTCTCAAAGGATATGCATGATTGG 1481 Query 116717 GAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||| | |||||||| ||||| || |||||||| ||||| | || || || || Sbjct 1482 GAGAACAGGTTGAACGATGACGAGAAACACTTCATCAAACACGTCTTAGCTTTCTTTGCT 1541 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGT 116832 || || || |||||||||||||| || | || | ||| || | ||||| || | Sbjct 1542 GCTTCAGATGGAATCGTCAACGAGAACTTGATTGAAAGATTCAGCGGA-GAGGTTCAAGC 1600 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||| || || || |||||||| ||||||||||| Sbjct 1601 GGCAGAAGCCCGATGCTTCTATGGCTTTCAGAT 1633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515061575126000