Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq15554 147 2e-30 >seq15554 Length=1095 Score = 147 bits (162), Expect = 2e-30 Identities = 270/391 (69%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || | |||||||| | | ||| | | Sbjct 23 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 82 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATT--A 97348 |||||||||| | | ||||| | ||| ||||| || || || | | ||| | Sbjct 83 TTCCAAGCACTTAAAATAATTCTACGATCAGTTGGATTAAATTGAATTTTTTGAATACAA 142 Query 97349 TCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTG 97408 ||| ||||||||||||| |||| | | ||||| | |||| | || |||||||| Sbjct 143 TCT--TTTAATTGATCAAAACCTTTTTGATAATAATCATCTTTAAAAGTTTTATATTCTG 200 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCAC 97468 | |||||||| |||||||| |||||||||| ||||| | ||||||||| ||| || Sbjct 201 CACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAAATCTCCTTCTGATCTTTCTG 260 Query 97469 AGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAG 97528 || |||| ||| |||||| | | ||||||||||| ||| |||||| | || || Sbjct 261 TTAATCCAATACTATTTAAATAAGTCTTAGATCCATTTCCATTCCAAATATTTACTCCTT 320 Query 97529 ATGCTGCAAGCTCT-TTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACA 97587 || || | ||| || || ||| |||||| | |||||||| | ||||| | | Sbjct 321 TTGATGATAATTCTAATGATG-AAGTTGATCCTTTTATAAACCAAAGTAATTCATGTATG 379 Query 97588 ACACCTCTCCAAAATACTCTCTTAGTTGTTA 97618 | || | ||||||| | ||||| |||| Sbjct 380 ATCGCTTTTGTAAATACTTTTTTAGTCGTTA 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346680558125750