Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15554 127 3e-24 seq23507 86.0 9e-12 >seq15554 Length=1095 Score = 127 bits (140), Expect = 3e-24 Identities = 252/364 (69%), Gaps = 28/364 (8%) Strand=Plus/Plus Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| |||||| |||||||| ||||||||| || | |||| || | ||| ||| Sbjct 23 ACATAAAATTG-ACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGG 81 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatt---ttttattttatttat 205676 |||||| || |||| || || |||| |||| | ||| || ||||| | || Sbjct 82 ATTCCAAGCACTTAAAATAAT---TCTACGATCAGTTGGATTAAATTGAATTTTTTGAAT 138 Query 205677 AATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAAT---ATA 205733 | || | ||||||||||||| |||| |||| ||||| ||| || | | ||| Sbjct 139 ACAATCTTTTAATTGATCAAAACCTT--TTTG-ATAATAATCATCTTTAAAAGTTTTATA 195 Query 205734 TTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCT 205793 || ||||||||||| | ||||||||| ||||||| || |||||||| |||||| ||| Sbjct 196 TTCTGCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAAATCTCCTTCTGATCT 255 Query 205794 ATCATTAAAACCACGtttttttatata--ttttaatgatccattttcatcccaaatatgg 205851 || | || ||| | |||| ||| | ||| ||||||||| ||| |||||||| Sbjct 256 TTCTGTTAATCCAATACTATTTAAATAAGTCTTA--GATCCATTTCCATTCCAAATATTT 313 Query 205852 attcctttattttttaGAATATTTGTATT-----AGTTGATCCAGATATAAACCATAATA 205906 | ||| |||| | ||| || || | ||||||||| ||||||||| | || Sbjct 314 ACTCC-----TTTTGATGATAATTCTAATGATGAAGTTGATCCTTTTATAAACCAAAGTA 368 Query 205907 ATTC 205910 |||| Sbjct 369 ATTC 372 >seq23507 Length=5149 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 205324 ATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATA 205383 ||||| | ||||||||| ||||| ||| || | ||| ||| | ||| | | Sbjct 335 ATTTTAATTTTTGGAAACTTTCTTGGTTCACGATCAAGTTGAATTTGAATAGGATTTAAA 276 Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 |||| | ||| | |||||||| ||| | | | ||| |||||| | |||| | ||| Sbjct 275 TGATCATTATAAAGATGTGCATCACCCAATTGAATAATTAATTCAAAAGGTTCTGTATTG 216 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | | || |||||||| | | |||| || ||| | ||||||||||| ||| Sbjct 215 GTGACTTTTGAAATCATATGAACAAGTAAAGCGTATGAAGCTATATTAAATGGTAATCCT 156 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATG 205540 || || ||||| |||||||||||||| | | ||||| Sbjct 155 AATCCTATATCTGCTGATCTTTGATAAAGTATACATG 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755224877680000