Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13424 87.8 2e-12 >seq13424 Length=872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 || ||||| | || ||||| |||||||| | || ||||||||| || ||||||||| Sbjct 277 TGACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCA 336 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 || || || || | || || || || ||||| || || || |||||||| ||||| | Sbjct 337 GCAAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGG 396 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATT 43131 || | | ||||| ||| ||| | || | ||||| ||| | | | ||||| || | Sbjct 397 GGAATACCTTCCTTATCC-TGAATCTTGGCTTTGA-CGTTGTCAATTGTGTCCGAAGACT 454 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | || || | ||||||||||| || || || Sbjct 455 CGACTTCCAAGGTGATGGTTTTACCAGTCAG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571642659553000