Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq15554 141 7e-29 >seq15554 Length=1095 Score = 141 bits (156), Expect = 7e-29 Identities = 277/404 (69%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 || || ||| |||| || ||| |||||| |||| | | | || ||| | ||| Sbjct 420 TTACCATTACTAACGACTAAAAAAGTATTTACAAAAGCGATCATACATGAATTACTTTGG 361 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||| ||||||||||| || || | | ||||||||| || ||||||| Sbjct 360 TTTATAAAAGGATCAACTTCATCATTAGAATTATCATCAAAAGGAGTAAATATTTGGAAT 301 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTG-ACAACCGTCAAGAGGGGGA 20222 | | ||||||||||| | |||| | || | |||||| | || ||| || || || Sbjct 300 GGAAATGGATCTAAGACTTATTTAAATAGTATTGGATTAACAGAAAGATCA-GAAGGAGA 242 Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAA 20282 ||| || || | |||||||||||||||||||||||||| || |||||| || | | Sbjct 241 TTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAAA-ACTTTTA 183 Query 20283 CACAA-ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAA 20341 | | |||||| | | |||| | ||||||||| || || |||| | |||| || Sbjct 182 AAGATGATTATTATCAAAAAGGTTTTGATCAATTAAAAGATTGTATTCAAAAAATTCAAT 123 Query 20342 CGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAA 20401 || |||| || | |||||||||||| | || ||||| || ||| | || || Sbjct 122 TTAATCCAACTGATCGTAGAATTATTTTAAGTGCTTGGAATCCTTCTGATTTATCTAAAA 63 Query 20402 TGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCT 20445 |||| | ||||| ||||||||| | || |||||||| ||| || Sbjct 62 TGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGTTACT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399064927778875