Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12187 96.9 3e-15 >seq12187 Length=3801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/172 (74%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| || ||| |||| ||| |||| |||||| ||||||||| || ||| Sbjct 3743 GAGGTGTACGGCTCAAAACATTCGTTGAAGCCCATGATCTGACTGGTCGAAGCAGTAGGC 3684 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC-GTG-CTTTGAAATTTTACTCTTGAGCA 22619 || ||||| | || |||||||| ||||| || ||| | |||| |||| | || || Sbjct 3683 ATTGGCGCAAGCAAAAGCGAGTTCCTCAATCCAGTGGCCTTGATCTTTTCTTTCAGATCA 3624 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 || ||| | |||||| ||||| || || || | |||||||||||||||| Sbjct 3623 TC--CCATTTCCACAGGTCGGAGGGTGTAAC---GCCCCACATATCGTATTG 3577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445630023342000