Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13424 91.5 1e-13 >seq13424 Length=872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||| | || | ||| | || ||||| || || ||||||||||| Sbjct 567 CCACCACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCG 626 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||| || ||||| || |||||| |||||| |||||| ||||| || || Sbjct 627 AGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGG 686 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | ||||| | || ||| ||| Sbjct 687 ATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACT 746 Query 143138 TCAACAGTCACCGTCTTGCCGGTCA 143162 || | || | || ||||| |||| Sbjct 747 TCCAGTGTGATTGTTTTGCCAGTCA 771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || ||||| || || ||||| || ||||||| ||||| || ||||| ||||||||||| Sbjct 277 TGACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCA 336 Query 143015 CTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | ||| | || | || || ||||||||||| ||| |||| || || || || || || Sbjct 337 GCAAGTGTTCGTCCA-TCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGG 395 Query 143074 AGGTATGCCTTCTTTGTC 143091 || || ||||| || || Sbjct 396 GGGAATACCTTCCTTATC 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506859285282000