Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13424 109 1e-18 >seq13424 Length=872 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| ||||| || || || || Sbjct 564 ATTCCACCACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCC 623 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||| || ||||| ||||||||||| || | | |||||||| || Sbjct 624 GCGAGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGC 683 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||| || || || ||||| || | || ||| | ||| Sbjct 684 GGGATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCG 743 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| || || || ||||| ||| Sbjct 744 ACTTCCAGTGTGATTGTTTTGCCAGTCAGT 773 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | ||||| || || || || || || |||| || |||| || || || Sbjct 297 TACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGTCCATCCTC 356 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| || ||||| ||||| | |||||| ||||| || || ||||| |||||||| Sbjct 357 CAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTATCCTG 416 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| || || || | || || || || || || | || || || || Sbjct 417 AATCTTGGCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACTTCCAAGGTGATGGTTTT 476 Query 104530 ACCAGTAAG 104538 |||||| || Sbjct 477 ACCAGTCAG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151037337653300