Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15554 149 7e-31 seq12028 95.1 1e-14 >seq15554 Length=1095 Score = 149 bits (164), Expect = 7e-31 Identities = 246/350 (70%), Gaps = 14/350 (4%) Strand=Plus/Plus Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCC---TGATCTATATCAG 7060 || ||||||||||||| || | |||||| ||||| || ||| | | || ||||| Sbjct 21 TAACATAAAATTGACAAAACATATGACAAGGAGG---AAGTGCCATTTTAGATAAATCAG 77 Query 7061 ATGGATTCCAAGCAGTCATTAAAATACGTCT---ATCATTTGGATTTGTTTTTAATTTTG 7117 | |||||||||||| |||||||| ||| |||| ||||| || || |||||| Sbjct 78 AAGGATTCCAAGCA---CTTAAAATAATTCTACGATCAGTTGGA-TTAAATTGAATTTTT 133 Query 7118 TTATAATTAT-TTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATA 7176 | | | || || ||||||||| | ||| | | ||||| | | | || || || Sbjct 134 TGAATACAATCTTTTAATTGATCAAAACCTTTTTGATAATAATCATCTTTAAAAGTTTTA 193 Query 7177 TAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236 || | || |||||||||||||||||||| |||||||| || |||||||| |||||| Sbjct 194 TATTCTGCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAAATCTCCTTCTGAT 253 Query 7237 CGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGT 7296 | | | ||||| | | |||||||| || || ||||||| ||| |||||||| | Sbjct 254 CTTTCTGTTAATCCAATACTATTTAAATAAGTCTTAGATCCATTTCCATTCCAAATATTT 313 Query 7297 ACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCA 7346 || |||| |||||| | ||| || || |||||||| | ||||| Sbjct 314 ACTCCTTTTGATGATAATTCTAATGATGAAGTTGATCCTTTTATAAACCA 363 >seq12028 Length=2947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | |||||| | | ||||||||||| ||| ||||| ||||| ||| Sbjct 1190 GTAAAAGTTAGAATTAGATCTACAAGAATACCTGAAACAGGAGATAAATTTGCATCTAGA 1131 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||||| ||| || || | ||| | |||||||||||||| ||||| Sbjct 1130 CATGGACAAAAAGGTACAGTAGGGATTTTATATAGACAAGAAGATATGCCATTTACATCT 1071 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACG 19504 || || || |||||| | |||||||| || |||||| | ||| || |||||| Sbjct 1070 GAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCCCATCACGTATGACG 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595689700410000