Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16765 129 9e-26 seq18697 102 1e-17 seq15202 100 4e-17 seq22943 93.3 7e-15 seq23050 89.7 8e-14 >seq16765 Length=5768 Score = 129 bits (142), Expect = 9e-26 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16440 GTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | | |||| ||||| ||||||||||| |||||||||||||| || || ||| Sbjct 2773 GTCATCGTAAAA-TCTTGCGAGACAACATCCAAGGTATCACCAAGCCAGCCATTCGACGT 2831 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||| ||| ||||||| | |||| ||||| | ||||| | Sbjct 2832 CTTGCTCGACGAGGTGGTGTCAAACGTATCTCTGGTCTCATCTACGAAGAAACTCGTGGT 2891 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 ||| | || |||||||| ||| ||||||| Sbjct 2892 GTTCTTAAAATCTTCCTTGAGAACGTTATC 2921 >seq18697 Length=6434 Score = 102 bits (112), Expect = 1e-17 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| |||||| |||||||||||||| ||||| || || || ||| | ||| Sbjct 1794 GTCATCGTAAGAT-TCTTCGTGATAACATCCAAGGTATCACTAAACCTGCCATCAGACGT 1736 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||| | ||||| |||||||| ||| ||||||| ||| | ||||| |||| | | | | Sbjct 1735 TTGGCTAGACGTGGAGGAGTCAAACGTATCTCTGGTTTGATTTATGAGGAGACTAGAGGT 1676 Query 16559 GTT 16561 ||| Sbjct 1675 GTT 1673 >seq15202 Length=7793 Score = 100 bits (110), Expect = 4e-17 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| ||| || || ||||||||||| ||||| ||||| || || ||||| | || || Sbjct 684 AGAT-TCTGCGTGACAACATCCAAGGTATCACGAAGCCTGCAATTCGTCGATTAGCCCGA 626 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | || || || |||||| |||||||| | | || || |||| || | |||| | ||| Sbjct 625 AGAGGAGGTGTAAAGCGTATCTCTGGACTCATTTACGAGGAGACACGAGGTGTTCTCAAG 566 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||||||||| ||| |||||| | ||| | || ||||||||| Sbjct 565 ATCTTCCTCGAGAACGTTATTCGAGATTCAGTCACATATACCGAG 521 >seq22943 Length=3005 Score = 93.3 bits (102), Expect = 7e-15 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| |||||| || |||||||||||||||||||| || ||||||||||| Sbjct 1098 GTCATCGTAAGAT-TCTTCGTGACAACATCCAAGGAATCACCAAACCTGCTATCCGTCGA 1040 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 | || || | || || || ||||| |||| || ||| | || ||||||| ||| | Sbjct 1039 TTAGCGCGAAGAGGAGGTGTTAAGCGAATCTCAGGCTTGATTTACGAAGAGACTCGAGGA 980 Query 16559 GTTTTGAAGATCTTCCTC 16576 || || ||| | | |||| Sbjct 979 GTCTTAAAGGTATGCCTC 962 >seq23050 Length=5560 Score = 89.7 bits (98), Expect = 8e-14 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| ||||| ||||||||||| |||||||| || || ||||| || | ||||| || | Sbjct 5441 TCTTGCGAGACAACATCCAAGGTATCACCAAACCCGCAATCCGGCGATTAGCTCGACGAG 5382 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||| |||| || | |||||||||||| Sbjct 5381 GTGGTGTCAAGCGTATCTCGGGTCTTATCTATGAAGAGA 5343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052822336175