Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15554 116 1e-20 >seq15554 Length=1095 Score = 116 bits (128), Expect = 1e-20 Identities = 216/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 111409 CAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTT-TCTAGATTCAGTT 111467 || ||||| ||||| |||||| ||||||||||||| ||||| | || || || Sbjct 326 CATCAAAAGGAGTAAATATTTGGAATGGAAATGGATCTAA-GACTTATTTAAATAGTATT 268 Query 111468 GGTCTTGTCGACAACGA--AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCC 111525 || || | | || || |||||| ||| | ||||| |||| |||||||||||| | | Sbjct 267 GGA-TTAAC-AGAAAGATCAGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGAC 210 Query 111526 ACTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAAT 111585 | ||||||||||| || ||||| | | || ||| || | | || |||||||| Sbjct 209 ATTTTGGTGCAGAATATAAAACTTTTAAAGATGATTATTATCAAAAAGGTTTTGATCAAT 150 Query 111586 T-ACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGT 111644 | | ||| ||| ||| | ||||| | || |||||| |||| | |||||| | ||| Sbjct 149 TAAAAGATTGT-ATTCAAAAAATTCAATTTAATCCAACTGATCGTAGAATTATTTTAAGT 91 Query 111645 GCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAG 111704 || ||||| || || || |||||||||||||| || |||||| | | || || Sbjct 90 GCTTGGAATCCTTCTGATTTATCTAAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAA 31 Query 111705 TTTTATGT 111712 |||||||| Sbjct 30 TTTTATGT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302944886639450