Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13424 96.9 3e-15 >seq13424 Length=872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| ||||| | ||| | ||| || ||||| || ||||||||||| Sbjct 567 CCACCACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCG 626 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || || |||| ||||| || || || || ||| Sbjct 627 AGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGG 686 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||| | || | ||| |||| ||| |||| Sbjct 687 ATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACT 746 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 || | || | ||||| || || || Sbjct 747 TCCAGTGTGATTGTTTTGCCAGTCAG 772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||||||| |||| || ||||| | || ||||||||||| ||||||||||| Sbjct 280 CCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 339 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || || || || || |||||| ||||| ||||| || || Sbjct 340 AGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGA 399 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || |||| | || | || || | ||||||| Sbjct 400 ATACCTTCCTTATC-CTGAATCTTGGCTTTGACGTTGTCAATTGTGTCCGAAGACTCGAC 458 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGA 131214 || | ||| | ||||||||| || ||| Sbjct 459 TTCCAAGGTGATGGTTTTACCAGTCAGA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471868393584000