Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13424 120 3e-22 >seq13424 Length=872 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| |||| | ||||| || | | || || | ||| | ||||| Sbjct 482 ACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACGTCAAAGCC 423 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||| |||||||| || || ||||| || || || |||||||| ||| Sbjct 422 AAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGGTAAA 363 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| || || | | ||||||||||| ||||| || || || | ||| Sbjct 362 CAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCTTCAT 303 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||||||||||||| Sbjct 302 TTGGTATTGCGATTGCGCGGAGGT 279 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| |||| || ||||| ||| || |||| || | ||| || |||| Sbjct 769 ACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAGGCC 710 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| |||||||| ||||| || || |||||||||||| | || ||||| || || Sbjct 709 AAAATTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGGAAAG 650 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||| || | ||||||||||| || || ||||| ||| | ||| Sbjct 649 CAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCTCCAT 590 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | || || || || || Sbjct 589 CTTGTGCTCCGTTTACGTGGTGG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419602799728375