Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13424 165 2e-35 seq5295 96.9 6e-15 >seq13424 Length=872 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| | ||||||||||| || || || ||||| ||||||||||| ||||| | Sbjct 280 CCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 339 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | || || ||||| || || |||| |||||||| || ||| Sbjct 340 AGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGA 399 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||| || |||||| || || ||||| | || || ||| Sbjct 400 ATACCTTCCTTATCCTGAATCTTGGCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACT 459 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||||||||||||||| || || || Sbjct 460 TCCAAGGTGATGGTTTTACCAGTCAG 485 Score = 109 bits (120), Expect = 1e-18 Identities = 137/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || || |||||||| ||||| | |||||| | || || || | Sbjct 586 CAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGTGCGACCGTCCTCCA 645 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| || || || || | | |||||| || || || || ||||||||||| |||| Sbjct 646 GTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCCTTGTCCTGAA 705 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || |||||||| || || ||||| | ||||| ||||||| ||||| ||||| | Sbjct 706 TTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACTTCCAGTGTGATTGTTTTGC 765 Query 68434 CCGTGAG 68440 | || || Sbjct 766 CAGTCAG 772 >seq5295 Length=6318 Score = 96.9 bits (106), Expect = 6e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| ||||| || |||||||||||||| ||||||||||| | ||| || Sbjct 895 ATAAGTCGTTGCTGGTCTGGGGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACATTG 954 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| |||| ||| || || | |||||| || || ||||||||| Sbjct 955 TCGATTGTGTCGGCTGCTTCGACCTCGAGGGTGATAGTCTTACCCGTGAGG 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921340441147000