Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13424 89.7 6e-13 >seq13424 Length=872 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 ||||||| | || ||||| |||||||| | || ||||||||| || |||||||||| Sbjct 278 GACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAG 337 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 | || || || | || || || || ||||| || || || |||||||| ||||| | | Sbjct 338 CAAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGG 397 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTC 42157 | | | ||||| ||| ||| | || | ||||| ||| | | | ||||| || || Sbjct 398 GAATACCTTCCTTATCC-TGAATCTTGGCTTTGA-CGTTGTCAATTGTGTCCGAAGACTC 455 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAG 42187 || || | ||||||||||| || || || Sbjct 456 GACTTCCAAGGTGATGGTTTTACCAGTCAG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543046610834000