Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13424 114 1e-20 >seq13424 Length=872 Score = 114 bits (126), Expect = 1e-20 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| ||||| || ||||| | | ||||||||||| |||||||| || Sbjct 280 CCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 339 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||||| | ||||||| ||||||||||| || || Sbjct 340 AGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGA 399 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || ||| | || | ||| | ||| || | ||||| | ||||| | Sbjct 400 ATACCTTCCTTATC-CTGAATCTTGGCTTTGACGTTG-TCAATTGTGTCCGAAGACTCGA 457 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 | || | || | ||||||||||||||| Sbjct 458 CTTCCAAGGTGATGGTTTTACCAGTCAGA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496110574722000