Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13424 98.7 9e-16 >seq13424 Length=872 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| | | ||| || | ||| || || || ||||||||||| || ||||| Sbjct 280 CCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 339 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| |||||| || || | || | ||| || ||||| || ||| Sbjct 340 AGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGA 399 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| ||||| ||||| || ||||| || | || | ||||| ||||||||||| Sbjct 400 ATACCTTCCTTATCCTGAATCTTGGCTTTGA-CGTTGTCAATTGTGTCCGAAGACTCGAC 458 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 ||| | || | ||||| || || ||| Sbjct 459 TTCCAAGGTGATGGTTTTACCAGTCAGA 486 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||||||||| ||||| || ||||| || || | || || Sbjct 584 CACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGTGCGACCGTCCTC 643 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || ||| ||||| || | ||||| ||||| || || ||||| || ||||| || || || Sbjct 644 CAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCCTTGTCCTG 703 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| |||| || | |||||||| || |||||||| || || | ||||| Sbjct 704 AATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACTTCCAGTGTGATTGTTTT 763 Query 45311 GCCGGTTAG 45319 ||| || || Sbjct 764 GCCAGTCAG 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451864915271000