Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12187 95.1 1e-14 >seq12187 Length=3801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 311/481 (65%), Gaps = 12/481 (2%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 |||||||||| | ||||| ||| | || ||||| || ||| || || |||| Sbjct 3592 CCCACATATCGTATTGGAGTTCTCCTAGACTAGCGGGCGAGCCGGGAAACGTTTCGTATG 3533 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 ||| || | | || | ||| | || || |||||||| ||||| | |||||| | Sbjct 3532 CGCCTTCCGACACTGCAAGCTCGTTGGAGGCTTCAAGGGCTGCATGATAGAGTGTCTCGA 3473 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA- 116241 | || |||| |||| | ||||| || |||||| || | || | ||| || Sbjct 3472 AGATCTGAGCGTTCAATTTTTTGGCTTCCAGGGAATCGAATG---GAAGCTTCAAGATTT 3416 Query 116242 --AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 || |||| || | || | || |||| || || || ||||||||||| || |||| Sbjct 3415 GGAAGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGATGTCTCATGTTGGACT 3356 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 || ||| ||||| || ||||| ||| || | | ||| | || |||| Sbjct 3355 TTTTAGCTTCAGGGACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACGTGA 3296 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 116419 | ||||||| | || || ||||||| | ||||| | || || | || ||| || Sbjct 3295 CTTCCTTTGTCACCTCGTGTAGCTTTTGGAAATCATA-----GACTC-CGTCGGTGATAT 3242 Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 || | || || ||||| || ||||| || || || | |||||| | | |||| Sbjct 3241 ACGTCGGCAGCGCGATCGAGGCCAGGTTGCAAACCGCCACCTCATCTGGGGCTGAATACT 3182 Query 116480 CTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 116539 | || || || || || | ||||| ||| ||||| || | |||||||||||| || | Sbjct 3181 CGATGATCTCAGTGCAAAGGTTTGATGACTTGATGGTACCAAGGTTCTTTTGATTCGATT 3122 Query 116540 T 116540 | Sbjct 3121 T 3121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613319505141000