Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13424 109 1e-18 seq23784 98.7 2e-15 >seq13424 Length=872 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| |||||| ||||| | || | |||||| ||||| || Sbjct 304 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGTCCATCCTCCAGTTGT 363 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| || ||||| ||||| || ||| ||||| ||||||||||| Sbjct 364 TTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTATCCTGAATCTTG 423 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| || | ||||| | | || || ||||| ||||| || ||||| || Sbjct 424 GCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACTTCCAAGGTGATGGTTTTACCAGTC 483 Query 199607 AGA 199609 ||| Sbjct 484 AGA 486 >seq23784 Length=6235 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || ||||||||||||| |||||||||||||||||| | ||||| Sbjct 1240 AGGACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCC 1299 Query 199478 TCCAGCTGCTTTCCGGCGA 199496 || |||||||||||||||| Sbjct 1300 TCGAGCTGCTTTCCGGCGA 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178551906764825