Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13424 96.9 3e-15 seq4231 86.0 6e-12 >seq13424 Length=872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || |||||||||||| | || |||||| | | |||| | | |||| | || Sbjct 485 CTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACG-TCAA 427 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || || || |||||| | ||||||||||| || || | || || Sbjct 426 AGCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGG 367 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||||| ||||| || | || || || || ||||||||||||||||| | || || Sbjct 366 TAAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCT 307 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| |||| ||| | || || Sbjct 306 TCATTTGGTATTGCGATTGCGCGGAGG 280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || || |||||||| ||||| | || ||||| || |||||| | | | | || Sbjct 772 CTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAAG 713 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGG 38383 | ||||| | ||||| || || || |||||| || ||||| || | || | || || Sbjct 712 GCCAAAATTCAGGACAAGGAAGGTAT-CCCGCCAGATCAACAACGTTTGATCTTTGCTGG 654 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || || ||||| |||| ||||| ||| || ||||||||||| |||||| | || || Sbjct 653 AAAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCT 594 Query 38444 GCATTTGGTGCTGCGTTT 38461 ||| | ||||| ||||| Sbjct 593 CCATCTTGTGCTCCGTTT 576 >seq4231 Length=3588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || |||||||| || ||||| || || || || | || || ||| ||| | || Sbjct 1633 ATCTGAAAGCCATAGAAGCATCGGGCTTCTGCCGCTTGAACCTCTCCGCTGAATCTTTCA 1574 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 | || || ||||||||||| || || || || || || || | ||||| |||||| Sbjct 1573 ATCAAGTTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAAGCTAAGACGTGTTTGATG 1514 Query 133339 AAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || || ||||| |||||||| | |||||| || || | ||||| || || || Sbjct 1513 AAGTGTTTCTCGTCATCGTTCAACCTGTTCTCCCAATCATGCATATCCTTTGAGAGATCG 1454 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 | ||| || | |||||||| || ||||||||| Sbjct 1453 ATCTCTTCAGCTGTCCAAAAGGAAGCCTCGGCT 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500019778384000