Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq13424 107 8e-18 seq22556 98.7 4e-15 seq12028 96.9 1e-14 seq13614 89.7 2e-12 >seq13424 Length=872 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 |||||||||||||| || || | || || || || || || | ||||| | ||| Sbjct 485 CTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACGTCAAA 426 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || ||||| ||||||||||| ||||| ||||| ||||| || |||| || | || Sbjct 425 GCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGGT 366 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||| || |||||| |||| | || ||||| || || | ||||| | || ||| Sbjct 365 AAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCTT 306 Query 391251 CACTTAGTATTAAGACTGAGAGGA 391274 || || ||||| || || | ||| Sbjct 305 CATTTGGTATTGCGATTGCGCGGA 282 Score = 96.9 bits (106), Expect = 1e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391070 ACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAA 391129 ||||||||| ||||| || || || || || ||||| || || | ||||| | | || Sbjct 773 ACTGACTGGCAAAACAATCACACTGGAAGTCGAATCCTCCGACACTATTGACAATGTCAA 714 Query 391130 ACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGG 391189 |||||||| || |||||||| || || || |||||||||||||| || || | || Sbjct 713 GGCCAAAATTCAGGACAAGGAAGGTATCCCGCCAGATCAACAACGTTTGATCTTTGCTGG 654 Query 391190 GAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACT 391249 || ||||| || || || | || | |||||||| || || | ||||| |||| || Sbjct 653 AAAGCAACTGGAGGACGGTCGCACACTCGCGGATTACAACATCCAGAAGGAATCAACCCT 594 Query 391250 TCA 391252 || Sbjct 593 CCA 591 >seq22556 Length=4330 Score = 98.7 bits (108), Expect = 4e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 108265 CATTACGAGCACCTATTTGTTGTATAATGGGCCATGTTGATGCAGGTAAAACTTCTCTGC 108324 ||||| || ||||||| ||||||||||| ||||| ||| ||||||||| || | Sbjct 2323 CATTAAGACCACCTATCGTATGTATAATGGGACATGTAGATCATGGTAAAACTACTTTAT 2264 Query 108325 TTGATTCTATTAGATCTTCTACTATTGCTAACGACGAAGCCGGCGGTATTACCCAACAAA 108384 | ||||| |||| |||||| |||||||| | | ||||| ||||| ||||| ||||| | Sbjct 2263 TAGATTCACTTAGGTCTTCTTCTATTGCTGATCAAGAAGCTGGCGGGATTACTCAACATA 2204 Query 108385 TTGG 108388 |||| Sbjct 2203 TTGG 2200 >seq12028 Length=2947 Score = 96.9 bits (106), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 248475 AAATT--CAACTAAACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGAT 248532 ||||| || ||| ||||||||||||||| ||||| || ||| | |||| |||| Sbjct 1145 AAATTTGCATCTAGACATGGACAAAAAGGTACAGTAGGGATTTTATATAGACAAGAAGAT 1086 Query 248533 ATGCCTTTCACATCAGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCT 248592 ||||| || ||||| ||||| || ||| ||| | ||| | ||||| |||| ||| || Sbjct 1085 ATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCCCA 1026 Query 248593 ACACGTATGACTATGGGACAATTAG 248617 |||||||||| || ||||| |||| Sbjct 1025 TCACGTATGACGATCGGACATTTAG 1001 >seq13614 Length=15652 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || || ||||| |||||||||| || ||||| ||||| | ||||||| ||| ||| Sbjct 824 GGTATCGATCTCGGAACCACCTACTCTTGTGTTGGTGTATGGCAAAATGATCGTGTCGAA 765 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || || |||||||||||| ||||| || ||||| | ||| ||| || ||||| Sbjct 764 ATCATTGCCAATGACCAAGGAAACCGAACCACCCCTTCTTACGTAGCTTTCACTGATTCC 705 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAAA 451066 ||| ||||| | || | || || ||| Sbjct 704 GAACGACTTATTGGTGATGCCGCCAAA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975098842493300