Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13614 113 3e-19 seq12406 93.3 3e-13 seq15554 87.8 1e-11 >seq13614 Length=15652 Score = 113 bits (124), Expect = 3e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | || || || || || | || ||| ||||| |||||| |||| | ||| Sbjct 621 ACCAATCAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGATTCATTGCAACTTGGTTTTT 680 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| ||||| || |||| | || || || | || || || || || || || Sbjct 681 GGCGGCATCACCAATAAGTCGTTCGGAATCAGTGAAAGCTACGTAAGAAGGGGTGGTTCG 740 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || ||||| ||||| ||||| ||||| || | |||||||||||||||| |||||| Sbjct 741 GTTTCCTTGGTCATTGGCAATGATTTCGACACGATCATTTTGCCATACACCAACACAAGA 800 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || ||||| | ||| ||||| | ||| Sbjct 801 GTAGGTGGTTCCGAGATCGATACCGACAGC 830 >seq12406 Length=8609 Score = 93.3 bits (102), Expect = 3e-13 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| | ||||| || || ||||||||||| ||| |||| ||| | |||| | | Sbjct 5800 TGTACTTTGATTTTAACGGAAGGAGATTCAGCCAAATCATTGGCTGTTGCTGGGTTAACA 5741 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || ||||| ||||| ||||||| |||||||||||| | |||||| | | || ||| || Sbjct 5740 GTCATTGGGCGAGATAATTATGGTGTTTTCCCACTTCGTGGAAAATTACTAAACGTTCGG 5681 Query 635561 GATGCTAGTCCTaaaaaaaTTGCT-GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTG 635618 || || ||| || ||||| | | || | || ||| || || || || || ||| Sbjct 5680 GAAGCCAGT-GGAACTCAATTGTTGGCGAACGCTGAGATT-CAACATATTAAGAAGATTA 5623 Query 635619 TTGGACTTGAACAAGGAAA 635637 | |||||| ||||||| || Sbjct 5622 TGGGACTTCAACAAGGCAA 5604 >seq15554 Length=1095 Score = 87.8 bits (96), Expect = 1e-11 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 663205 AGAAGGAGATATTGGTCCAGGATACGGTTTTCAAATGAGATATTGGGGAGCTGAGTACAC 663264 |||||||||| | || || || || |||||| |||| ||| || || || || | Sbjct 250 AGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAA 191 Query 663265 TGATTGTAAAACATCTTACCAAGGACAAGGTATTGATCAATTAAACAAATGTATTGAATC 663324 || |||| ||| | | ||||| ||||||||||||| | |||||| || Sbjct 190 AACTTTTAAAGATGATTATTATCAAAAAGGTTTTGATCAATTAAAAGATTGTATTCAAAA 131 Query 663325 TATTCAAAATAATCCTCACGACAGAAGAATCATGATAAATCTTTGGAATTGTTCTGATTT 663384 |||||| |||||| || | ||||| || ||| | ||||||| ||||||||| Sbjct 130 AATTCAATTTAATCCAACTGATCGTAGAATTATTTTAAGTGCTTGGAATCCTTCTGATTT 71 Query 663385 AGATAAAATGGCACTTGCACCATGTCAT 663412 | ||||||||||||| | || |||||| Sbjct 70 ATCTAAAATGGCACTTCCTCCTTGTCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779607869879350