Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13614 172 7e-38 seq7946 161 1e-34 seq22659 145 1e-29 seq6678 134 2e-26 seq18203 105 8e-18 seq12406 98.7 1e-15 >seq13614 Length=15652 Score = 172 bits (190), Expect = 7e-38 Identities = 203/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || |||||||| || ||||||||| Sbjct 1 TCGAAATCTTCACCACCCAAGTGGGTGTCACCAGCAGTGGCTTTGACCTCGAAGATACCT 60 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | || ||||| || |||||||| || || || || ||||| ||| Sbjct 61 TCCTCGATGGTCAAGAGAGAGACATCGAAAGTACCACCTCCGAGATCGAAGATGAGCACG 120 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | | ||||| || |||||||| ||||| || || || || ||||| Sbjct 121 TTACGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCGGTAGGTTCG 180 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| ||| ||||| | || | ||||| || || |||||||| Sbjct 181 TTGATGATACGGAGAATGTTGAGGCCCGAGATCAAACCGGCATCCTTGGTAGCTTGTCGC 240 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || ||||| ||||| || ||||| || || || Sbjct 241 TGAGAGTCGTTGAAGTAAGCAGGGACGGTGACCAC 275 >seq7946 Length=3501 Score = 161 bits (178), Expect = 1e-34 Identities = 282/407 (69%), Gaps = 9/407 (2%) Strand=Plus/Plus Query 11250 AACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATC 11309 |||||||||| | |||| || | ||||||||||| ||| || | | ||| || | Sbjct 1911 AACATCAGGTCTATCAACTGCAATATGACGATCAAATCGACCAGGTCTAAGTAATGCTTT 1970 Query 11310 GTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTTCAGTTTCATTCTCGAA 11369 || | || ||| || ||||| || ||| |||||| | | || | | | ||||| Sbjct 1971 ATCTAATACATCAGCTCGATTTGTACCAGCTAAAACAACTACATGAGCTGAAGTATCGAA 2030 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 ||||||||||| ||||||||| |||| ||| ||| | ||||| || | |||| Sbjct 2031 TCCATCCATTTCAACTAATAATTGATTAAGAGTTGATTCTCTTTCATCATTCCCTCCAAA 2090 Query 11430 CCC-----ATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATA 11484 || ||| ||| |||| |||||||||||||| || ||||||| ||| | |||| Sbjct 2091 TCCTCCTGATT--TACCTCTTGCTTTACCAATCGCATCTATCTCATCTACAAACACAATA 2148 Query 11485 CACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCT 11544 || ||| ||||| || | |||||| ||| | |||||| || ||||| ||| Sbjct 2149 CATGGTGCATTTTTTTTGGCTGTTGCAAATAAATCTCTTACTCTTGATGGTCCTACTCCT 2208 Query 11545 ACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATTCACC 11603 ||||||||||| || ||| ||| || ||| ||||| | || || || | ||| || Sbjct 2209 ACAAACATTTCTACAAACTCTGATCCTGAA-ACTGATAAGAATGGTACTCCTGCTTCTCC 2267 Query 11604 CGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTG 11650 ||| | || ||||| | |||||||||||||||||| ||||| Sbjct 2268 GGCTGTTGCTTTGGCTAATAAGGTTTTACCTGTACCTGGTGGACCTG 2314 >seq22659 Length=1091 Score = 145 bits (160), Expect = 1e-29 Identities = 468/714 (66%), Gaps = 38/714 (5%) Strand=Plus/Minus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 || ||||| || | || ||||| || || |||||||| ||||| || | || || ||| Sbjct 702 GCAGCTTGAACAGCAGCACCGTACGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGT 643 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 | || || | || || | || ||| ||||| || ||||| ||||||||| Sbjct 642 TGACGGCCACCGAAGAAGTCGGAAACCAAAGATTGGATTTTGGGAATTCGGGTCGATCCA 583 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC--TCGAAGTGTTT 7202 || ||||| ||||| || | ||||| || || || | ||| | || || || || Sbjct 582 CCAACCAAGACGATCTCCTCAACTTTGGACTTGTCAACCTTGGCATCCTTCAAAACCTTG 523 Query 7203 TTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTTC--CTCAAAACG 7257 | |||| || |||| || || ||||| ||| || | || ||| ||||| Sbjct 522 T--CGACGGGATCCAGAGTAGAT---CGGAA--AGTGGTGGCATTGATCTCCTCGAAACG 470 Query 7258 TGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGT 7317 ||||||| ||||||| | |||| || | || | | |||| || |||| ||| | || Sbjct 469 AGCACGGGAGATGGATGCAGAGAAGTCGGCACCCTGGAATAATGAGTCAACTTCGACAGT 410 Query 7318 TGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 || || | || || | ||||| || || || ||||| |||| || | ||| || Sbjct 409 GGTCTGGGTGACTGAGGAGAGGGTTCGTTTGGCACGTTCACATGCCGAACGGAGACGTCG 350 Query 7378 AAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAA 7437 |||||||| | | ||| ||||| | ||| ||| ||||| || || | ||| Sbjct 349 GAGGGCACGGGCATCACCATCGATATCGTGCTTGGTTTTCCGTTTGAATTCAGCTTTGAA 290 Query 7438 GTG-TCGAAG-GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||| || ||| ||| | | ||||||||||| ||||| | || || || || ||||| Sbjct 289 GTGCTCTAAGAGAGCGTTG--TCGAAATCTTCTCCACCAAGATGGGTGTCACCAGCGGTG 232 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATG--TTTAACAACGAAACATCAAACGTACCAC 7553 |||||||| | |||| || || ||| | || | || ||||| || ||||||| Sbjct 231 GCTTTGACAGCGAAGACTCCACCGGTGATGGAATGAAGA--GAGACATCGAAGGTACCAC 174 Query 7554 CACCCAGGTCAAAAATGA-----GTACGTTCGTATCGTCGTCTTTGTT---------CTT 7599 | |||| ||| || || | | ||| || | || | |||||| || || Sbjct 173 CTCCCAAGTCGAAGATCAAGACGGCACGCTCCT-TCCT-GTCTTTCTTCTCACTGGCCTC 116 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 | | | |||||| | ||||| || | || ||||| || || ||||||||| || || Sbjct 115 ACCTAAACCGTAGGTAATAGCAGCGGTAGTAGGTTCGTTGATGATACGAAGAACGTCAAG 56 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||||| | | || ||||| | | | ||| || || || || ||||| Sbjct 55 ACCAGCAATGGCACCAGCGTCTTTGATAGATAATCGCTGAGAGTCATTGAAGTA 2 >seq6678 Length=1983 Score = 134 bits (148), Expect = 2e-26 Identities = 197/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 ||||| || || || |||||||| || ||||| |||| || || | || || ||||| Sbjct 420 GGGATACGGGTGGAACCACCGACTAATACGATCTCATGGACGTTGGCCTTGTCAATCTTG 361 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 ||||||| | ||| || ||||| ||||| || | ||||||||| || ||| Sbjct 360 GAGTCTCTCAACACTTTCTCAACAGGCTCCATGGTCTTCCTGAACAAGTCTTGGCAGAGT 301 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || |||||||||| ||||| ||||| ||||| || || | | || ||| Sbjct 300 TCCTCGAATCGAGCACGGGTAAGAGATGTGTAGAAGTCAACACCCTCAAAGAGAGAGTCA 241 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || || | || || || | || || | ||||||||||| || || || || ||| Sbjct 240 ATCTCGATAGAAGTCTGGGCAGCGGAGGAGAGGGTTCGCTTTGCACGTTCGCAAGCAGTT 181 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || | || || | ||||| | |||||||| | |||| Sbjct 180 CGAAGTCGTCGGACAGCACGAGCATTACCGGAGAGATCT 142 >seq18203 Length=4728 Score = 105 bits (116), Expect = 8e-18 Identities = 180/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| || || || || || || || ||||||| ||| Sbjct 2409 ATCGAAATCTTCACCACCCAAGTGGGTGTCACCAGCTGTAGCCAACACCTCAAAGACACC 2350 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | || ||| | | || ||||| || |||||||| || || || | ||||| Sbjct 2349 CTCATCGATGGAAAGGAGAGAGACATCGAAGGTACCACCTCCAAGATCGTACACAATGAT 2290 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | |||| || | ||| |||| || ||||| || || ||||| || || ||||| Sbjct 2289 T--TGTCGT----TCACCCTTGGTCTTGTCAAGACCATAGGCAATAGCGGCGGCGGTTGG 2236 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || | ||||||||| ||||| ||||| || | | ||||| || || || || Sbjct 2235 CTCGTTGACGATACGAAGAACGTTCAAACCAGCGATCATACCGGCATCCTTGGTTGCCTG 2176 Query 7693 TCGTTGCGAATCGTTAAAG 7711 ||||| | ||||| ||| Sbjct 2175 ACGTTGAGCGTCGTTGAAG 2157 >seq12406 Length=8609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 184139 TTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAAGT 184198 || ||||| ||||| |||| |||||| |||| || | || ||| ||| | | | Sbjct 5604 TTGCCTTGTTGAAGTCCCATAATCTTCTTAATATGTTGAATCTCAGCGTTCGCCAACAAT 5663 Query 184199 TGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAA 184258 || || |||| || || || ||||| |||| || | ||| || |||||||| ||| Sbjct 5664 TGAGTTCCACTGGCTTCCCGAACGTTTAGTAATTTTCCACGAAGTGGGAAAACACCATAA 5723 Query 184259 TGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCG 184318 | ||| || |||| |||| | ||||||| || | || ||| || ||||| ||||| Sbjct 5724 TTATCTCGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGAATCTCCTTCC 5783 Query 184319 GTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGT 184378 || | ||| | |||||||| | | | | || || || ||||||||||| || ||| Sbjct 5784 GTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGCATCCTCTAGT 5843 Query 184379 TT 184380 || Sbjct 5844 TT 5845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634938489059000