Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12187 104 3e-17 >seq12187 Length=3801 Score = 104 bits (114), Expect = 3e-17 Identities = 405/627 (65%), Gaps = 20/627 (3%) Strand=Plus/Plus Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 ||||||||||| | ||| |||||| || ||||| || || || ||| | || | | Sbjct 3127 AATCAAAAGAACCTTGGTACCATCAAGTCATCAAACCTTTGCACTGAGATCATCGAGTAT 3186 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| | ||||||| ||| || || ||||| || || ||||| || || | |||| | Sbjct 3187 TCAGCCCCAGATGAGGTGGCGGTTTGCAACCTGGCCTCGATCGCGCTGCCGACGTATAT- 3245 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 || ||| || | | ||||| |||| || ||||| || || || ||||| Sbjct 3246 ----CACCGACGGAGTC-TATGATTTCCAAAAGCTACACGAGGTGACAAAGGAAGTCACG 3300 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA 112592 ||| | || | | |||||| |||| |||||||| ||| ||| || Sbjct 3301 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTCCCTGA---AGCTAAAAAG 3357 Query 112593 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC--A 112650 || || |||||||| ||||| || || |||| || | || | || |||| ||| | Sbjct 3358 TCCAACATGAGACATCGTCCCATCGGAATCGGAGTAAACGGATTAGCAGATGCCTTCCAA 3417 Query 112651 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTG 112710 || ||| || | |||| |||||| ||||| || || | || || | || || | Sbjct 3418 ATC-TTGAAGCTTC-CATTCGATTCCCTGGAAGCCAAAAAATTGAACGCTCAGATCTTCG 3475 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCAT 112770 ||||| | ||||| || || ||||| || ||| | |||| | || || ||| Sbjct 3476 AGACACTCTATCATGCAGCCCTTGAAGCCTCCAACGAGCTTGCAGTGTCGGAAGGCGCAT 3535 Query 112771 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 112830 | ||||| ||| || || || ||| | ||| | || |||| |||||||||| Sbjct 3536 ACGAAACGTTTCCCGGCTCGCCCGCTAGTCTAGGAGAACTCCAATACGATATGTGGG-GC 3594 Query 112831 GTGAGACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGG 112888 || | ||| | | || | | ||||| | ||| || ||| ||||||| | || Sbjct 3595 GTTACACCCTCCGAC-CTGTGGAAATGGGATGATCTGAAAGAAAAGATCAAGGCCACTGG 3653 Query 112889 TCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 112948 | | ||| |||||| | || |||||||| || || || ||| || ||| |||| Sbjct 3654 ATTGAGGAACTCGCTTTTGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAGATCATGGG 3713 Query 112949 TAATAATGAATGCTTTGAACCCTACAC 112975 || ||||| ||||| || ||||| Sbjct 3714 CTTCAACGAATGTTTTGAGCCGTACAC 3740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620552491622000