Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7946 95.1 1e-14 seq7295 84.2 3e-11 >seq7946 Length=3501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/408 (65%), Gaps = 3/408 (1%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| ||||| || | ||| | || | ||| | | |||| | ||||| || | Sbjct 1938 ACGATCAAATCGACCAGGTCTAAGTAATGCTTTATCTAATACATCAGCTCGATTTGTACC 1997 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || | ||||| | | | | | |||| || |||||||| || || | ||| || Sbjct 1998 AGCTAAAACAACTACATGAGCTGAAGTATCGAATCCATCCATTTCAACTAATAATTGATT 2057 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT--TGCTTTCCC 9368 || |||| ||| | |||||||||| || | || || | | | | |||||| || Sbjct 2058 AAGAGTTGATTCTCTTTCATCATTCCCTCCAAATCCTCCTGATTTACCTCTTGCTTTACC 2117 Query 9369 ACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 | ||||| |||||||| | || |||||||||||| ||||| ||| || |||| Sbjct 2118 AATCGCATCTATCTCATCTACAAACACAATACATGGTGCATTTTTTTTGGCTGTTGCAAA 2177 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 | ||| | || ||| | || || || |||||||| || ||||| | || | || Sbjct 2178 TAAATCTCTTACTCTTGATGGTCCTACTCCTACAAACATTTCTACAAACTCTGATCCTGA 2237 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | | | ||| || || | ||| || || | ||| ||| | | || ||||| Sbjct 2238 AACTGATAAGAATGGTACTCCTGCTTCTCCGGCTGTTGCTTTGGCTAATAAGGTTTTACC 2297 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||||| ||| | |||| || || |||||||||||| || Sbjct 2298 TGTACCTGGTGGACCTGAAAGGATAGCTCCTTTTGGAATCTTGGCTCC 2345 >seq7295 Length=5679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7194 AGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAG 7253 ||||||||||| || || || || |||||||||| ||||||| ||| | |||||||| Sbjct 4003 AGAGATTGGGGACATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGAT 3944 Query 7254 GAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 7297 | ||| || || ||||| |||| || ||||| || ||| |||| Sbjct 3943 GTAGCAGAAGACTATGTTTTAGCTACCGGTGAAACACATCCAGT 3900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589800302749000