Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12028 132 4e-25 seq6678 132 4e-25 seq13614 129 5e-24 seq15554 123 2e-22 seq13424 93.3 3e-13 seq20299 87.8 1e-11 >seq12028 Length=2947 Score = 132 bits (146), Expect = 4e-25 Identities = 178/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 344422 AATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCA 344481 ||||| || ||||| || | ||| | |||| | ||||||||| || |||||||||| Sbjct 940 AATGGTGTAGCATCACCTTCATTTCCTGTGATTGTAGAAACTTTACTTAATAAACATTCA 999 Query 344482 ATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGA 344541 | ||| || || |||||||||||| || ||| || |||||||||||| ||||| ||| Sbjct 1000 ACTAAATGTCCGATCGTCATACGTGATGGGATAGCATGAGGATTAATAATGATATCCGGA 1059 Query 344542 ATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTAAAT-CCAACTGTTCC 344600 | |||| ||| ||||| | |||| | | | || | |||| || ||||| || Sbjct 1060 CAAATTCCTTCAGATGTAAATGGCATATCTTCTTG-TCTATATAAAATCCCTACTGTACC 1118 Query 344601 TTTTTGTCCAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTTTCTGATCTAAC 344660 |||||||||| ||| |||| |||||||| ||| | | || |||||| ||||||| Sbjct 1119 TTTTTGTCCATGTCTAGATGCAAATTTATCTCCTGTTTCAGGTATTCTTGTAGATCTAAT 1178 Query 344661 TCGAA 344665 || || Sbjct 1179 TCTAA 1183 >seq6678 Length=1983 Score = 132 bits (146), Expect = 4e-25 Identities = 266/392 (68%), Gaps = 2/392 (1%) Strand=Plus/Plus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||| || ||||||||||||||||| |||||||| | || || ||||| ||||| || Sbjct 544 TTAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATCCTTTCCGGCG 603 Query 552268 AAACTGATGA-AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 | ||| || || ||| ||| || || | || | |||||| | ||||| || || ||| Sbjct 604 ATACTTCCGAGAAGACT-CAAGATCTTCTTCTCTTGGATGTTGCACCTCTCTCGCTGGGT 662 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || |||| || ||| | | ||| ||| ||| |||| || || |||||| Sbjct 663 ATCGAGACAGCCGGTGGTGTCTTTACTCCTCTCATCCCCCGAAACACAACCATTCCTAAC 722 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || | | ||| || || ||| | || || ||| ||| ||| | |||||| || Sbjct 723 CGCAAGTGTGAAACATTCTCAACTTATACCGACAACCAACCTGGTGTCAACATTCAAGTT 782 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || ||| | || || || || | | | |||| || | | Sbjct 783 TTCGAGGGTGAACGTGCTCGTACGAAGGACAACCACCTCTTGGGTAAATTCGAACTCACT 842 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||||||||| |||||||| || || ||||| ||||| ||||||||| | |||||| Sbjct 843 GGTATTCCTCCTGCCCCTCGTGGTGTTCCTCAAATCGAAGTCACTTTCGATGTGGATGCC 902 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || | || || |||||| ||| || Sbjct 903 AACGGCATCCTCAACGTCTCTGCTTCTGACAA 934 >seq13614 Length=15652 Score = 129 bits (142), Expect = 5e-24 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | |||||||| || |||||||||||| |||||||||| | Sbjct 831 AGCTGTCGGTATCGATCTCGGAACCACCTACTCTTGTGTTGGTGTATGGCAAAATGATCG 772 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| ||||| ||| |||| || || ||||| || ||||||| Sbjct 771 TGTCGAAATCATTGCCAATGACCAAGGAAACCGAACCACCCCTTCTTACGTAGCTTTCAC 712 Query 550111 GGAAACTGAAC-ATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTAC 550167 || | |||| | ||| |||||||||| || ||| | |||| || || |||||| Sbjct 711 TGATTCCGAACGACTTA-TTGGTGATGCCGCCAAAAACCAAGTTGCAATG--AATCCTCA 655 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGG 550200 ||| || | || || || || ||| | ||||| Sbjct 654 CAACACCGTCTTCGACGCCAAGCGTCTGATTGG 622 >seq15554 Length=1095 Score = 123 bits (136), Expect = 2e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 |||||||||||||| | ||||||||| | || ||||||||| ||||| ||| Sbjct 41 ATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCCAAGCACTTAAAATA 100 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATTTAATTGATCAATT 399688 ||||| |||||| |||||||| ||| | |||||||| ||||||||||||| Sbjct 101 ATTCTACGATCAGTTGGATTAAATTGAATTTTTTGAATACAATCTTTTAATTGATCAAAA 160 Query 399689 CCTTGATCATGATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATTTGA 399748 |||| | || |||||| |||| || | | ||||| || || ||||||||| |||| Sbjct 161 CCTTTTTGATAATAATCATCTTTAAAAGTTTTATATTCTGCACCAAAATGTCTCCATTGA 220 Query 399749 AATCCATAACCGGGGCCAATATCTCC 399774 ||||||||| || || | |||||| Sbjct 221 AATCCATAAATCGGTCCTAAATCTCC 246 >seq13424 Length=872 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||| | |||||| ||| || ||||| || ||||||||||| || |||| | ||| Sbjct 297 TACCAAATGAAGAGTAGACTCCTTTTGG--ATGTTGTAATCAGCAAGTGTTCGTCCATCC 354 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || |||||||| |||||||| || |||| || || ||||| ||||| ||||| ||||| Sbjct 355 TCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTATCC 414 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 ||||| || ||| || |||||||| || Sbjct 415 TGAATCTTGGCTTTGACGTTGTCAATTGTGTC 446 >seq20299 Length=5221 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915 |||| ||| || |||||||| |||| | | || |||||| ||| || ||| |||| Sbjct 3941 TTTCGTACCGTTCCATCATAAGCTACCATCACATCCTCTAACGCTTTCACCAATCTTCTC 4000 Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 ||||||||||| || ||||| || || | || |||| ||| | |||||| | || ||| Sbjct 4001 TGGATATAACCTGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGCC 4060 Query 390976 ATAACTTGGAAGAAAAATTCC 390996 ||| | || ||||| || ||| Sbjct 4061 ATAGCATGAAAGAAGAACTCC 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028001651617750