Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13614 131 1e-24 seq12028 127 1e-23 seq15554 120 2e-21 seq13424 95.1 8e-14 seq10218 93.3 3e-13 >seq13614 Length=15652 Score = 131 bits (144), Expect = 1e-24 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||| ||| | ||||| || ||| |||||| | ||| |||||||||| | || ||| Sbjct 824 GGTATCGATCTCGGAACCACCTACTCTTGTGTTGGTGTATGGCAAAATGATCGTGTCGAA 765 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||||||||||||||| || |||| || || || || || |||| ||||| | Sbjct 764 ATCATTGCCAATGACCAAGGAAACCGAACCACCCCTTCTTACGTAGCTTTCACTGATTCC 705 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| |||||||| ||||| || ||| | |||| |||| |||||| || || | Sbjct 704 GAACGACTTATTGGTGATGCCGCCAAAAACCAAGTTGCAATGAATCCTCACAACACCGTC 645 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || || || || | ||||||||||||| || | ||| ||| ||| ||||||| Sbjct 644 TTCGACGCCAAGCGTCTGATTGGTCGTAAATTCGCGGATGAGGATGTTCAAAATGATATG 585 >seq12028 Length=2947 Score = 127 bits (140), Expect = 1e-23 Identities = 275/402 (68%), Gaps = 16/402 (4%) Strand=Plus/Plus Query 269111 GCCTCGTTAACAATTGTGTCGGTCCACGCGCTCTAGAGTGAGTTTTATCGCCCACCATTT 269170 |||| ||||| | ||| || || | || ||||| ||| ||||||| |||||| | Sbjct 731 GCCTAGTTAAGATCTGTACAGGACCTCTAGCCCTAGAATGAATTTTATCATTCACCATAT 790 Query 269171 GTTTTAAACGCTGATAATATGTCGGACCAATAAATATTTTGACATGCATTTTTTC-TCCC 269229 ||||||| | |||||||| || ||||||| | | | |||| | | ||||| ||| Sbjct 791 GTTTTAATCTTTGATAATAAGTAGGACCAAGATA-ACATTGAGCTCTAAGTTTTCGTCCT 849 Query 269230 GTCATACCATTTGTCATTGTTTCATTTCCCCATGCTTCATATCCGTATGA---AACTAGT 269286 || |||||| ||| |||| || | | || |||||| | || || || Sbjct 850 GTATGACCATTATACATGATTTCTAAACCTCTAGATTGATATCCATTTGTCTTAAGTAAG 909 Query 269287 TCATCATTTATTTTATTAATATCTACACCTGTAAATGGTGTCGCATCACCATATACTCCT 269346 || | | || || || ||| | | |||||||| |||||||| | |||| Sbjct 910 TCTGAAATCGCTTC--TACAGTC-ACATCACTGAATGGTGTAGCATCACCTTCATTTCCT 966 Query 269347 TTAATAGCACATACTTTTCCTAATAGACATTCAATCAATTGTCCAATGGTCATACGTTTT 269406 | || | | | ||||| | ||||| |||||||| || ||||| || ||||||||| | Sbjct 967 GTGATTGTAGAAACTTTACTTAATAAACATTCAACTAAATGTCCGATCGTCATACGTGAT 1026 Query 269407 GGCATACAATTAGGATTAATAATAATATCTGGCACAAGTC---CAGATTTAGTAAATGGC 269463 || ||| || |||||||||||| ||||| || || || ||||| ||||||||| Sbjct 1027 GGGATAGCATGAGGATTAATAATGATATCCGGACAAATTCCTTCAGAT---GTAAATGGC 1083 Query 269464 ATATCTGCTCTATGAATTTTAAAT-CCAACTGTACCTTTTTG 269504 |||||| || | | || | |||| || |||||||||||||| Sbjct 1084 ATATCTTCT-TGTCTATATAAAATCCCTACTGTACCTTTTTG 1124 >seq15554 Length=1095 Score = 120 bits (132), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 330936 AAAATT-ATATAAAATATGACATGGAGGAAGTGCCATTTTATTAATATCCACTGGATTCC 330994 |||||| | | || |||||||| |||||||||||||||||| | ||| ||||||| Sbjct 27 AAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCC 86 Query 330995 ATAAATTAATAATAATTCTTCTATCTGTCGGATTATTTTTAATTGCTTCGATACAttttt 331054 | | | | ||||||||| | ||| || |||||| || |||| || ||||| | || Sbjct 87 AAGCACTTAAAATAATTCTACGATCAGTTGGATTAAATTGAATTTTTTGAATACAATCTT 146 Query 331055 ttAATTGATCAATTCCTTGCCCGCTGTAATCTTTTTTACAATTTTCATATGTTGCACCAA 331114 |||||||||||| |||| ||||| | |||| || ||| |||| |||||||| Sbjct 147 TTAATTGATCAAAACCTTTTTGATAATAATCATCTTTAAAAGTTTTATATTCTGCACCAA 206 Query 331115 AATATCTCATTTGGAAACCATATCCAGGACCTATATCACCT 331155 ||| |||| ||| || ||||| || |||| ||| ||| Sbjct 207 AATGTCTCCATTGAAATCCATAAATCGGTCCTAAATCTCCT 247 >seq13424 Length=872 Score = 95.1 bits (104), Expect = 8e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| | |||||| |||||||| || || ||| || | || ||||| || || || Sbjct 572 ACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGT 631 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || ||||||||||||||||| || | |||||||||||| || || || || Sbjct 632 GCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACC 691 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| ||||| || |||||| |||||||| || Sbjct 692 TTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGTGTC 733 >seq10218 Length=1389 Score = 93.3 bits (102), Expect = 3e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 748692 GAtttttttAACAAACCTGTTTATTTAACAGTATCAAATCAATTACATTTAGAATGTTTT 748751 || ||||| || |||||| |||||||||||| || | |||||||||||||||| |||| Sbjct 89 GAATTTTTCAATCAACCTGCTTATTTAACAGTTTCTAGTCAATTACATTTAGAAGCTTTT 30 Query 748752 GCTCATGGATTAGGCTATGTTTATACAAT 748780 ||| |||||||||| ||||||||||| Sbjct 29 GCTAATGGATTAGGTAGAGTTTATACAAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267129348497300