Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq7295 109 7e-19 >seq7295 Length=5679 Score = 109 bits (120), Expect = 7e-19 Identities = 174/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 48054 GTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGT 48113 ||||||||| ||||||||||||||||| ||| || ||||||||||| || | || || Sbjct 4380 GTACCCATAAAGTTTTGCAACACCATAGGGACTTCGAGGATAGAAAGGAGTTTTTTCAGT 4439 Query 48114 CTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAAC 48173 || ||||| || ||| |||||||||||||| || || |||||||| | | ||| Sbjct 4440 TTGAGGAGTTTCGACCACTTTACCATAAAGTTCTGAAGTAGAAGCTTGATAAAATCTAAC 4499 Query 48174 CCTA--TCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCA 48231 | | | | |||| ||||| || || |||| ||||| || || | || Sbjct 4500 ATGACGAGTAAGACCACAAG--TACGGATCGCGTCGAGCAATCTCAAAGTACCAAGTCCA 4557 Query 48232 TCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCA 48291 ||| | ||||||||| || | ||| ||||| || || || || ||| || || || Sbjct 4558 TCTACATCACCAGTATATTCTGCCATATCAAATGACACTTTAACGTGAGATTGAGCAGCA 4617 Query 48292 AGATTATA 48299 |||||||| Sbjct 4618 AGATTATA 4625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665290800307000