Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq13614 201 1e-46 seq13424 188 9e-43 seq6678 150 2e-31 seq18203 127 3e-24 seq5295 111 2e-19 seq16300 104 3e-17 seq23735 91.5 2e-13 >seq13614 Length=15652 Score = 201 bits (222), Expect = 1e-46 Identities = 194/249 (78%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | ||||||||| | ||||| || ||||| |||||||||||||||||||||||||| Sbjct 831 AGCTGTCGGTATCGATCTCGGAACCACCTACTCTTGTGTTGGTGTATGGCAAAATGATCG 772 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 ||| || || || | ||||||||||||||||| || || || || ||||| || || || Sbjct 771 TGTCGAAATCATTGCCAATGACCAAGGAAACCGAACCACCCCTTCTTACGTAGCTTTCAC 712 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||| ||||| || |||| |||||||| ||||| || || ||||| ||| ||| Sbjct 711 TGATTCCGAACGACTTATTGGTGATGCCGCCAAAAACCAAGTTGCAATGAATCCTCACAA 652 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 || ||||| ||||| |||||||| |||||||| || || ||||| || | || ||| | Sbjct 651 CACCGTCTTCGACGCCAAGCGTCTGATTGGTCGTAAATTCGCGGATGAGGATGTTCAAAA 592 Query 195538 CGATATAAA 195546 ||||| || Sbjct 591 TGATATGAA 583 Score = 154 bits (170), Expect = 2e-32 Identities = 202/280 (72%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 || |||| || || || ||||||||||||| || || || ||||| || || ||||| | Sbjct 280 ATTCAGTGGTCACCGTCCCTGCTTACTTCAACGACTCTCAGCGACAAGCTACCAAGGATG 221 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 | | | || |||| || ||| ||| | || ||||| ||||| || || || || | Sbjct 220 CCGGTTTGATCTCGGGCCTCAACATTCTCCGTATCATCAACGAACCTACCGCTGCCGCCA 161 Query 195828 TTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 | || || ||||| |||||||| | | | || || || | ||||| ||||||| Sbjct 160 TCGCCTACGGTCTTGACAAGAAGACCGTTGGTGAGCGTAACGTGCTCATCTTCGATCTCG 101 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 | |||||||| || |||||||| || | | || || | ||||| ||||| || || | Sbjct 100 GAGGTGGTACTTTCGATGTCTCTCTCTTGACCATCGAGGAAGGTATCTTCGAGGTCAAAG 41 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||||||||| || || | ||||||||||||||||| Sbjct 40 CCACTGCTGGTGACACCCACTTGGGTGGTGAAGATTTCGA 1 >seq13424 Length=872 Score = 188 bits (208), Expect = 9e-43 Identities = 151/182 (83%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || ||||| ||||| |||||| | || || ||||| || |||||||| || ||| ||||| Sbjct 485 CTGACTGGTAAAACCATCACCTTGGAAGTCGAGTCTTCGGACACAATTGACAACGTCAAA 426 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||||||||| ||||||||||| ||||| || || || || ||||| || ||||| ||| Sbjct 425 GCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGACCAACAGCGACTAATCTTTGCCGGT 366 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| || || |||||||| || || |||||||||||| | ||||||||||||||||| Sbjct 365 AAACAACTGGAGGATGGACGAACACTTGCTGATTACAACATCCAAAAGGAGTCTACTCTT 306 Query 172063 CA 172064 || Sbjct 305 CA 304 >seq6678 Length=1983 Score = 150 bits (166), Expect = 2e-31 Identities = 283/416 (68%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | || ||||| ||||| || ||||| || ||||| || || ||||||||||| Sbjct 534 AACAAGTCTATTAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATC 593 Query 196424 CTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTA 196483 || || || | | | || ||||||||||| || | ||||||||||| | Sbjct 594 CTTTCCGGCGATACTTCCGAGAAGACTCAAGATCTTCTTCTCTTGGATGTTGCACCTCTC 653 Query 196484 TCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACT 196543 || |||||| | || ||||| |||||||| | ||| | || | |||||||| Sbjct 654 TCGCTGGGTATCGAGACAGCCGGTGGTGTCTTTACTCCTCTCATCCCCCGAAACACAACC 713 Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603 ||||| | ||| || || ||||| ||| |||| || ||||| ||||| | Sbjct 714 ATTCCTAACCGCAAGTGTGAAACATTCTCAACTTATACCGACAACCAACCTGGTGTCAAC 773 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTC 196663 |||||||| | || || ||||| | ||| | ||||| ||||| || | || | ||| Sbjct 774 ATTCAAGTTTTCGAGGGTGAACGTGCTCGTACGAAGGACAACCACCTCTTGGGTAAATTC 833 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | || || ||||| |||| || | |||||||| || || | || |||||| Sbjct 834 GAACTCACTGGTATTCCTCCTGCCCCTCGTGGTGTTCCTCAAATCGAAGTCACTTTCGAT 893 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATC 196779 | || || || || || || |||||| | ||| |||||| | |||| ||||| Sbjct 894 GTGGATGCCAACGGCATCCTCAACGTCTCTGCTTCTGACAAGACCACTGGTAAATC 949 >seq18203 Length=4728 Score = 127 bits (140), Expect = 3e-24 Identities = 184/256 (72%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || | ||||| ||||| || ||||| || | | || || ||| | ||| Sbjct 2157 CTTCAACGACGCTCAACGTCAGGCAACCAAGGATGCCGGTATGATCGCTGGTTTGAACGT 2216 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852 |||| | || |||| || ||||| || || || ||||| |||||||| ||||||| ||| Sbjct 2217 TCTTCGTATCGTCAACGAGCCAACCGCCGCCGCTATTGCCTATGGTCTTGACAAGACCAA 2276 Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || ||| | |||| |||| | | ||||| || |||||||| || |||||||| || Sbjct 2277 GGGTGAACG-ACAAATC-ATTG-TGTACGATCTTGGAGGTGGTACCTTCGATGTCTCTCT 2333 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 || || || | ||| | || || || |||||| |||||||| || || | || Sbjct 2334 CCTTTCCATCGATGAGGGTGTCTTTGAGGTGTTGGCTACAGCTGGTGACACCCACTTGGG 2393 Query 195973 TGGTGAAGATTTCGAT 195988 |||||||||||||||| Sbjct 2394 TGGTGAAGATTTCGAT 2409 >seq5295 Length=6318 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || ||||||||||||||||| || | | ||||||||||| || | || Sbjct 1005 CCTCACGGGTAAGACTATCACCCTCGAGGTCGAAGCAGCCGACACAATCGACAATGTGAA 946 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTAT 171992 ||||||||||||| |||||||||||||| || || |||||||||||||| Sbjct 945 GACCAAGATTCAAGAAAAGGAAGGCATTCCCCCAGACCAGCAACGACTTAT 895 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 171997 GCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCT 172056 |||||||| || || || || ||||| ||||| |||||||||||| |||||||||| || Sbjct 823 GCTGGTAAGCAACTCGAGGACGGACGCACCCTTGCTGATTACAACATTCAAAAGGAATCG 764 Query 172057 ACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 ||||| || | || || | ||||| |||||||| Sbjct 763 ACTCTTCATTTGGTCCTGCGTCTTCGTGGTGGTGC 729 >seq16300 Length=959 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || ||||||||||||||||||||||| || || ||||| || || || ||||| Sbjct 212 CTCACCGGTAAAACTATCACCCTCGAGGTTGAATCTTCTGACACCATTGACAATGTCAAA 153 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTT 171994 ||||||||||| || ||||| || || ||||| || || ||||| | |||| Sbjct 152 GCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAACGTTTGATTT 101 >seq23735 Length=1892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 635 AGCTATTGGTATCGATCTCGGAACCACTTACTCCTGTGTGGGTGTTTGGCAAAACGATCG 576 Query 195358 TGTAGAGATTATCCCGAATGACC 195380 || ||||| || | ||||||| Sbjct 575 AGTGGAGATCATTGCCAATGACC 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657661135222000