Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13424 129 1e-24 >seq13424 Length=872 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA 192381 || ||||| ||||| | ||||| ||| || ||| || ||||||| | ||||||| || Sbjct 292 CGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGTCCA 351 Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| ||||||||| |||||||||| || |||||| ||||| || || ||||| ||| Sbjct 352 TCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGGAATACCTTCCTTA 411 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || ||| || || || | || || || || ||||| | || ||| Sbjct 412 TCCTGAATCTTGGCTTTGACGTTGTCAATTGTGTCCGAAGACTCGACTTCCAAGGTGATG 471 Query 192502 GTTTTACCAGT 192512 ||||||||||| Sbjct 472 GTTTTACCAGT 482 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | ||| || | || |||| ||| || ||||||||||| || | Sbjct 611 GATGTTGTAATCCGCGAGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACG 670 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| || || || ||||| || || || ||||| || ||||| |||| Sbjct 671 TTGTTGATCTGGCGGGATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGT 730 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || || ||||| ||||| || || || ||||| ||||| Sbjct 731 GTCGGAGGATTCGACTTCCAGTGTGATTGTTTTGCCAGT 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984171280916250