Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7946 122 3e-22 >seq7946 Length=3501 Score = 122 bits (134), Expect = 3e-22 Identities = 293/440 (67%), Gaps = 5/440 (1%) Strand=Plus/Plus Query 288788 TTAAATGGACGTCTAAAATTTTACGACGACCAGATACATCAGGCAAACCCACCCGCACCC 288847 ||||||| || || |||| ||| | ||| || |||||||| | | || ||| Sbjct 1877 TTAAATGAACCAAAAAGATTTGACGTCTACCTGAAACATCAGGTCTATCAACT-GCAATA 1935 Query 288848 TC-CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTT 288906 | | |||||| | ||||| | | ||||||| ||||||| ||| |||| ||||| Sbjct 1936 TGACGATCAAATCGACCAGGTCTAAGTAATGCTTTATCTAATACATCAGCTCGATTTGTA 1995 Query 288907 GCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 | || || ||||| | | | | | ||||||||||| ||| | |||| Sbjct 1996 CCAGCTAAAACAACTACATGAGCTGAAGTATCGAATCCATCCATTTCAACTAATAATTGA 2055 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| ||| ||| ||||||||||| |||| | | || || | | ||| | Sbjct 2056 TTAAGAGTTGATTCTCTTTCATCATTC---CCTCCAAATCCTCCTGATTTACCTCTTGCT 2112 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| ||||| || || || | || | | ||| || | ||||| | | || || Sbjct 2113 TTACCAATCGCATCTATCTCATCTACAAACACAATACATGGTGCATTTTTTTTGGCTGTT 2172 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||||| |||||||| | |||| ||| | || ||| ||||||||||||| || || Sbjct 2173 GCAAATAAATCTCTTACTCTTGATGGTCCTACTCCTACAAACATTTCTACAAACTCTGAT 2232 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || ||| | ||||| ||| |||||| || ||| ||| | || | | || Sbjct 2233 CCTGAAACTGATAAGAATGGTACTCCTGCTTCTCCGGCTGTTGCTTTGGCTAATAAGGTT 2292 Query 289207 TTACCTGTTCCAGGTGGTCC 289226 |||||||| || ||||| || Sbjct 2293 TTACCTGTACCTGGTGGACC 2312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471356058698075