Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12187 93.3 5e-13 >seq12187 Length=3801 Score = 93.3 bits (102), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1630089 GTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACGTA 1630148 ||| |||||||| ||||||||||| | || || || | |||||||| || || | ||| Sbjct 2524 GTTGAAGACGCGCAGCATGGGCACTATCCCATTTGAGTACCCGTTGGTACCAGCAATGTA 2465 Query 1630149 GGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTGGAGAT 1630208 || | || || | | || | ||||| || || |||| ||||||||| Sbjct 2464 ACTACCAGTAGCCCGGATATCATGAATATTGAGACCGATTCCACCAGCCGTCTTGGAGAT 2405 Query 1630209 GAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCCAC 1630268 | || ||| ||||| ||||| ||||| || || || ||||| | ||||||| || Sbjct 2404 CATAGCACACGTCTTGAGAGTGTCATAGATACCATCAATTGAGTCCGACTTCATGCTGAC 2345 Query 1630269 GAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGCGTGGG 1630322 | ||||||||||||| ||| || || | || || | |||||| || || || Sbjct 2344 CAAAAAGCACGACGAGAGTTGAGGATGGGGAGTTCCAGAGTTGAAAAGGGTAGG 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105130666883575