Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq7877 109 7e-19 seq15554 104 3e-17 >seq7877 Length=1366 Score = 109 bits (120), Expect = 7e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 116808 AAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTA 116867 |||||| || ||| |||| ||||||||||| ||||||||||||| ||||| || | Sbjct 8 AAGATAATAAGCTAAAGAATGTGGTTATTATGGGAAGAAAAACATGGGAAAGTATACCAA 67 Query 116868 ATAAATTTAAACCATTAAAAAATCGAATAAATATAATAGTTTC 116910 ||||||||||||| ||| |||||||||| |||||||| ||||| Sbjct 68 ATAAATTTAAACCTTTAGAAAATCGAATTAATATAATTGTTTC 110 >seq15554 Length=1095 Score = 104 bits (114), Expect = 3e-17 Identities = 172/239 (72%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 172349 AACTATACCATTGCTTACTACaaaaaaaaTTGTATATACTAAT---ATCCTCAAAGAACT 172405 |||| ||||||| || || || |||||| |||| ||| || ||| | | ||| | Sbjct 424 AACTTTACCATTACTAACGACTAAAAAA---GTATTTACAAAAGCGATCATACATGAATT 368 Query 172406 TTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAA-ATGATATAGGTGTTAAAG 172464 | ||| |||| ||||| |||||| ||| | ||||| || | | ||| || || Sbjct 367 ACTTTGGTTTATAAAAGGATCAACTTCATCATTAGAATTATCATCAAA-AGGAGTAAATA 309 Query 172465 TTTGGAATGATAATGGTTCTCGTGAATT-TTTAGATT-TATGCGGGTTTACTGAAAGAAA 172522 ||||||||| ||||| ||| || || |||| || ||| || || || |||||| Sbjct 308 TTTGGAATGGAAATGGATCTAA-GACTTATTTAAATAGTATT-GGATTAACAGAAAGATC 251 Query 172523 AGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATA 172581 |||||| |||||||| || |||||||||||||||||||||||| || || |||||| Sbjct 250 AGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632296097713000