Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13424 132 4e-26 seq5295 84.2 2e-11 >seq13424 Length=872 Score = 132 bits (146), Expect = 4e-26 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| ||||| | ||| || || ||||| || || ||||| |||||||| | |||||| Sbjct 576 AAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCGAGTGTGCGA 635 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || ||||| || |||||| | ||||| | ||| ||||| ||||| ||||| || Sbjct 636 CCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGGATACCTTCC 695 Query 29689 TTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || |||||| | |||||| | || | |||||| || ||| ||||| || || Sbjct 696 TTGTCCTG-AATTTTGGCCTTGACATTGTCAATAGTGTCGGAGGATTCGACTTCCAGTGT 754 Query 29748 TATAGTTTTGCCAGT 29762 || ||||||||||| Sbjct 755 GATTGTTTTGCCAGT 769 Score = 105 bits (116), Expect = 5e-18 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 29548 TTTTATCGT-TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAAT 29606 || |||| | || ||||| | ||| |||| ||||||||||| || || || ||||| || Sbjct 267 TTATATCATGTGACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGAT 326 Query 29607 GTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTG 29666 ||| ||||| |||| || || ||| || |||||||| || ||| | || | || || Sbjct 327 GTTGTAATCAGCAAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTG 386 Query 29667 CTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGT 29725 || || || |||||||| || || || || ||| || | |||||| | || | |||| Sbjct 387 TTGGTCAGGGGGAATACCTTCCTTATCCTG-AATCTTGGCTTTGACGTTGTCAATTGTGT 445 Query 29726 CAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| || ||||| | || || ||||| ||||| Sbjct 446 CCGAAGACTCGACTTCCAAGGTGATGGTTTTACCAGT 482 >seq5295 Length=6318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| ||||||||||| || ||||| ||||||||||| ||||| |||| |||||| Sbjct 743 ACGCAGGACCAAATGAAGAGTCGATTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGTCC 802 Query 29631 ATCATCGAGTTGTTTGCCAGC 29651 || |||||||| || ||||| Sbjct 803 GTCCTCGAGTTGCTTACCAGC 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385104293325975