Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7877 100 4e-16 seq15554 96.9 4e-15 seq12028 89.7 7e-13 >seq7877 Length=1366 Score = 100 bits (110), Expect = 4e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 116500 AAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAAAACATGGGATAGTATTCCTA 116559 |||||| || ||| || | ||||||||||| | ||||||||||| ||||| || | Sbjct 8 AAGATAATAAGCTAAAGAATGTGGTTATTATGGGAAGAAAAACATGGGAAAGTATACCAA 67 Query 116560 ATAAATTTAAACCATTAAAAAATCGAATAAATATAATAGTTTC 116602 ||||||||||||| ||| |||||||||| |||||||| ||||| Sbjct 68 ATAAATTTAAACCTTTAGAAAATCGAATTAATATAATTGTTTC 110 >seq15554 Length=1095 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/237 (72%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 168476 AACTATCCCACTTCTTACTACCaaaaaaaTTGTATACACTAACATTCTTAAA-GAACTTT 168534 |||| | ||| | || || || |||||| | | |||| | | || || | ||| | Sbjct 424 AACTTTACCATTACTAACGACTAAAAAAGTATT-TACAAAAGCGATCATACATGAATTAC 366 Query 168535 TATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAA-ATGATATAGGTGTTAAAGTT 168593 | ||| |||||||||| |||||| ||| | ||||| || | | ||| || || || Sbjct 365 TTTGGTTTATAAAAGGATCAACTTCATCATTAGAATTATCATCAAA-AGGAGTAAATATT 307 Query 168594 TGGAACGATAATGGTTCTCGTGAATT-TTTAGATT-TATGTGGTTTTACCGAAAGAAAAG 168651 ||||| | ||||| ||| || || |||| || ||| ||| || || |||||| || Sbjct 306 TGGAATGGAAATGGATCTAA-GACTTATTTAAATAGTAT-TGGATTAACAGAAAGATCAG 249 Query 168652 AAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATA 168708 |||| |||||||| || |||||||||||||||||||||||| || || |||||| Sbjct 248 AAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATA 192 >seq12028 Length=2947 Score = 89.7 bits (98), Expect = 7e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193501 |||||||||| ||| ||||||||| || || |||| | ||||||| || || || Sbjct 1163 ATACCTGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGTACAGTAGGGAT 1105 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTAT 193561 | ||| |||||||||||||||||||||| || ||| || || ||||| ||||| Sbjct 1104 TTTATATAGACAAGAAGATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTAT 1045 Query 193562 TAATCCAAATTGTATTCCATCCAGAATGACCAT 193594 |||||| || ||| ||||| | ||||| || Sbjct 1044 TAATCCTCATGCTATCCCATCACGTATGACGAT 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634983275353000