Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq15554 109 7e-19 seq7877 109 7e-19 seq12028 84.2 3e-11 >seq15554 Length=1095 Score = 109 bits (120), Expect = 7e-19 Identities = 173/239 (72%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 171561 AACTATACCATTACTTACTACaaaaaaaaTTGTATATACTAAT---ATCCTTAAAGAACT 171617 |||| |||||||||| || || |||||| |||| ||| || ||| | | ||| | Sbjct 424 AACTTTACCATTACTAACGACTAAAAAA---GTATTTACAAAAGCGATCATACATGAATT 368 Query 171618 TTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAA-ATGATATAGGTGTTAAAG 171676 | ||| |||| ||||| |||||| ||| | ||||| || | | ||| || || Sbjct 367 ACTTTGGTTTATAAAAGGATCAACTTCATCATTAGAATTATCATCAAA-AGGAGTAAATA 309 Query 171677 TTTGGAATGATAATGGTTCTCGTGAATT-TTTAGATT-TATGCGGGTTTACTGAAAGAAA 171734 ||||||||| ||||| ||| || || |||| || ||| || || || |||||| Sbjct 308 TTTGGAATGGAAATGGATCTAA-GACTTATTTAAATAGTATT-GGATTAACAGAAAGATC 251 Query 171735 AGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATA 171793 |||||| |||||||| || |||||||||||||||||||||||| || || |||||| Sbjct 250 AGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATA 192 >seq7877 Length=1366 Score = 109 bits (120), Expect = 7e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 116991 AAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTA 117050 |||||| || ||| |||| ||||||||||| ||||||||||||| ||||| || | Sbjct 8 AAGATAATAAGCTAAAGAATGTGGTTATTATGGGAAGAAAAACATGGGAAAGTATACCAA 67 Query 117051 ATAAATTTAAACCATTAAAAAATCGAATAAATATAATAGTTTC 117093 ||||||||||||| ||| |||||||||| |||||||| ||||| Sbjct 68 ATAAATTTAAACCTTTAGAAAATCGAATTAATATAATTGTTTC 110 >seq12028 Length=2947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193054 |||||||||| ||| ||||||||| || || |||| | ||||||| || || || Sbjct 1163 ATACCTGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGTACAGTAGGGAT 1105 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 | ||| |||||||||||||||||||||| || ||| || || ||||| ||||| Sbjct 1104 TTTATATAGACAAGAAGATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTAT 1045 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 |||||| || ||| || || | ||||| || Sbjct 1044 TAATCCTCATGCTATCCCATCACGTATGACGAT 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628338908736000