Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq13614 109 4e-18 seq12406 89.7 4e-12 seq15554 87.8 1e-11 >seq13614 Length=15652 Score = 109 bits (120), Expect = 4e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | || || || || || | || ||| ||||| | |||| |||| | ||| Sbjct 621 ACCAATCAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGATTCATTGCAACTTGGTTTTT 680 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| ||||| ||||| || |||| | || || || | || || || || || || || Sbjct 681 GGCGGCATCACCAATAAGTCGTTCGGAATCAGTGAAAGCTACGTAAGAAGGGGTGGTTCG 740 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || ||||| ||||| ||||| ||||| || | |||||||||||||||| |||||| Sbjct 741 GTTTCCTTGGTCATTGGCAATGATTTCGACACGATCATTTTGCCATACACCAACACAAGA 800 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | || ||||| | ||| ||||| | ||| Sbjct 801 GTAGGTGGTTCCGAGATCGATACCGACAGC 830 >seq12406 Length=8609 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| | ||||| || || ||||||||||| ||| |||| ||| | |||| | | Sbjct 5800 TGTACTTTGATTTTAACGGAAGGAGATTCAGCCAAATCATTGGCTGTTGCTGGGTTAACA 5741 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||| ||||| ||||||| |||||||||||| | |||||| | | || ||| || Sbjct 5740 GTCATTGGGCGAGATAATTATGGTGTTTTCCCACTTCGTGGAAAATTACTAAACGTTCGG 5681 Query 400417 GATGCTAGT 400425 || || ||| Sbjct 5680 GAAGCCAGT 5672 >seq15554 Length=1095 Score = 87.8 bits (96), Expect = 1e-11 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 426638 AGAAGGAGATATTGGTCCAGGATACGGTTTTCAAATGAGATATTGGGGAGCTGAGTACAC 426697 |||||||||| | || || || || |||||| |||| ||| || || || || | Sbjct 250 AGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAA 191 Query 426698 TGATTGTAAAACATCTTACCAAGGACAAGGTATTGATCAATTAAACAAATGTATTGAATC 426757 || |||| ||| | | ||||| ||||||||||||| | |||||| || Sbjct 190 AACTTTTAAAGATGATTATTATCAAAAAGGTTTTGATCAATTAAAAGATTGTATTCAAAA 131 Query 426758 TATTCAAAATAATCCTCACGACAGAAGAATCATGATAAATCTTTGGAATTGTTCTGATTT 426817 |||||| |||||| || | ||||| || ||| | ||||||| ||||||||| Sbjct 130 AATTCAATTTAATCCAACTGATCGTAGAATTATTTTAAGTGCTTGGAATCCTTCTGATTT 71 Query 426818 AGATAAAATGGCACTTGCACCATGTCAT 426845 | ||||||||||||| | || |||||| Sbjct 70 ATCTAAAATGGCACTTCCTCCTTGTCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739428780931350