Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15554 91.5 3e-13 seq8194 87.8 4e-12 >seq15554 Length=1095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||| || ||||||||||||||||||||||||||| | |||| | Sbjct 23 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 82 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 ||||| ||||| |||||||| | |||| | || | | || ||| || |||| Sbjct 83 TTCCAAGCACTTAAAATAATTCTACGATCAGTTGGATTAAATTGAATTTTTTGAATACAA 142 Query 59057 TGTTTTATTTGGTCAAATCCATT 59079 | ||||| ||| ||||| || || Sbjct 143 TCTTTTAATTGATCAAAACCTTT 165 >seq8194 Length=3458 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 |||| |||||||| |||||| |||| |||||||| || || || | ||| || | || | Sbjct 3325 CACCCGCATTATCAAATTCAC-CGCAGTAATTTGGAGCCGAGAAAAGAGTGACGAGTTGA 3267 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || ||| ||| ||||||||||||||||| ||||||| ||| || || Sbjct 3266 CGTTTGGCAAAGAATTCATAACCATCTTCTACAACTTGATGTGCTCG 3220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186440632195475