Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13424 113 3e-20 >seq13424 Length=872 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | ||| | ||| || || || || || ||||||||||| | | Sbjct 567 CCACCACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCG 626 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| |||| |||| ||| ||||| ||||| |||||||| || |||||| |||| Sbjct 627 AGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGCGGG 686 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| | | |||| ||| | |||||| ||||| || Sbjct 687 ATACCTTCCTTGTCCTGAATTTT-GGCCTTGACATTGTCAATAGTGTCGGAGGATTCGAC 745 Query 33702 GTCAACCGTGATCGTTTTACCTGT 33725 || | ||||| ||||| || || Sbjct 746 TTCCAGTGTGATTGTTTTGCCAGT 769 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||| || | ||| || || |||||||| ||||| ||| ||||| ||||||||||| Sbjct 276 GTGACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATC 335 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 | ||||| ||| | || |||| |||||| |||||||| || | ||||| || || | Sbjct 336 AGCAAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGG 395 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | |||||| || || ||| || | || || | ||| | ||||| || | Sbjct 396 GGGAATACCTTCCTTATCCTGAATCTT-GGCTTTGACGTTGTCAATTGTGTCCGAAGACT 454 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGT 33725 | || || | ||||| |||||||| || Sbjct 455 CGACTTCCAAGGTGATGGTTTTACCAGT 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328605951192000