Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4231 96.9 5e-15 >seq4231 Length=3588 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 |||||||| || || || |||| ||||| | ||| |||||| | |||||||| Sbjct 1633 ATCTGAAAGCCATAGAAGCATCGGGCTTCTGCCGCTTGAACCTCTCCGCTGAATCTTTCA 1574 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 ||| || || || || |||||||| ||| ||||| || || || || ||||| || Sbjct 1573 ATCAAGTTCTCGTTGACGATTCCATCTGAAGCAGCAAAGAAAGCTAAGACGTGTTTGATG 1514 Query 40058 AAATATTTTTCATCGGGTGTCAATTTATTC---CAGTCATTGATATCTTTTGATATATCT 40114 || | ||| || || |||| | ||| || |||| ||||| ||||| | ||| Sbjct 1513 AAGTGTTTCTCGTCATCGTTCAACCTGTTCTCCCAATCATGCATATCCTTTGAGAGATCG 1454 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 | ||||||||||||||||| || ||||| || Sbjct 1453 ATCTCTTCAGCTGTCCAAAAGGAAGCCTCGGC 1422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686698648839000