Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22609 156 3e-33 seq15554 123 2e-23 >seq22609 Length=3841 Score = 156 bits (172), Expect = 3e-33 Identities = 283/410 (69%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || |||||||| ||||| | || |||| ||| || |||| || ||||| Sbjct 1435 CCCAAGATCGTCAATGGTCCCGAAATTCTCAACAAATTTGTGGGAGAATCCGAGAAAAAT 1494 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC- 19547 | ||| | |||||||| ||||||| |||| | ||| | | || | || || Sbjct 1495 ATTCGAGAGCTATTTGCTGATGCTGAAGTAGAATACAAA-GCGAAAGGAGATGAA--TCA 1551 Query 19548 --TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 ||| |||||||| || | |||||||||||||| || ||||| || ||||| || Sbjct 1552 GGTTTACACATTATCATTTTCGATGAATTGGACGCGATTTGTAAACAGAGAGGATCAACG 1611 Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||||| | |||||| || | |||||||||||||| || || || | |||||| Sbjct 1612 GGTGGTGGGACTGGAGTGGGCGATTCGGTTGTCAATCAACTTCTCTCTAAGATGGACGGT 1671 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || | ||||| || ||||| || | ||||| ||||| ||| | || || | || ||| Sbjct 1672 GTAGATCAACTTAACAATATCTTGATCATTGGAATGACCAATCGTCTAGACATGATTGAC 1731 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 || | |||||||| ||||| || ||| | | || || || || || ||||| Sbjct 1732 GAAGCACTCTTACGACCTGGTCGATTAGAAGTTCACATGGAGATCTCTTTGCCTGATGAG 1791 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATG-CGACAAA 19828 |||| || | | ||||| ||||| ||||| ||| ||| |||||| Sbjct 1792 GGTGGTCGACTACAGATTTTGAACATCCATACTGCAAAGATGAGGACAAA 1841 >seq15554 Length=1095 Score = 123 bits (136), Expect = 2e-23 Identities = 276/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 || || || ||||| || |||||| | ||| |||| || | | ||| | | ||| Sbjct 420 TTACCATTACTAACGACTAAAAAAGTATTTACAAAAGCGATCATACATGAATTACTTTGG 361 Query 40752 TTTATCAAAGGTTGTACTA-ATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810 ||||| ||||| | ||| || | |||| |||||| || |||||| | |||||||| Sbjct 360 TTTATAAAAGGATCAACTTCATCATTAGAA-TTATCATCAAAAGGAGTAAATATTTGGAA 302 Query 40811 TGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870 || | | ||||| || ||||| ||| || |||||| ||| || ||||| || Sbjct 301 TGGAAATGGATCTAAGACTTATTTAAATAGTATTGGATTAACAGAAAGATCAGAAGGAGA 242 Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930 | | || || ||||||||||||| | | |||||||||| ||| ||||| | ||| | | Sbjct 241 TTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAAAACTTTTAA 182 Query 40931 CTCTGATTA-TACCAATAAAGGAATGGATCAATT---ACAGTGCGTT--ATAGATACGAT 40984 |||||| || ||| ||||| | |||||||| | | || || | | || | || Sbjct 181 AGATGATTATTATCAA-AAAGGTTTTGATCAATTAAAAGATTGTATTCAAAAAATTCAAT 123 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 | ||||| | | ||| || | || || || | || ||||| || | || || Sbjct 122 TTAATCCAA--CTGAT---CGTAGAATTATTTTAAGTGCTTGGAATCCTTCTGATTTATC 68 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 | |||||| | || ||||||||| |||| ||||| ||||| ||| Sbjct 67 TAAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGTT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397337443222375