Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7946 82.4 1e-10 >seq7946 Length=3501 Score = 82.4 bits (90), Expect = 1e-10 Identities = 266/408 (65%), Gaps = 5/408 (1%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| ||||| || | ||| | || | ||| | | ||| | ||||| || | Sbjct 1939 CGATCAAATCGACCAGGTCTAAGTAATGCTTTATCTAATACATCAGCTCGATTTGTACCA 1998 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || | ||| || | || | | || || |||||||| || | |||||||||| Sbjct 1999 GCTAAAACAACTACATGAGCTGAAGTATCGAATCCATCCATTTCAACTAATAATTGATTA 2058 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT--TGCTTGCCCA 11627 | ||| |||||| |||||||| || | || || | | | | ||||| ||| Sbjct 2059 AGAGTTGATTCTCTTTCATCATTCCCTCCAAATCCTCCTGATTTACCTCTTGCTTTACCA 2118 Query 11628 C-CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 |||||| |||||||| | || |||||||||||| ||||| ||| || |||| Sbjct 2119 ATCGCATCTATCTCATCTACAAACACAATACATGGTGCATTTTTTTTGGCTGTTGCAAAT 2178 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||| | || ||| | || || || |||||||| || ||||| | || | || Sbjct 2179 AAATCTCTTACTCTTGATGGTCCTACTCCTACAAACATTTCTACAAACTCTGATCCTGA- 2237 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 |||| | |||||| || || ||| || || | ||| ||| | | ||| || || Sbjct 2238 AACTGATAAGAATGGTACTCCTGCTTCTCCGGCTGTTGCTTTGGCTAATAAGGTTTTACC 2297 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||||||| ||| | || | || ||| || |||||||| || Sbjct 2298 TGTACCTGGTGGACCTGAAAGGATAGCTCCTTTTGGAATCTTGGCTCC 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627839861460000