Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12187 89.7 6e-13 >seq12187 Length=3801 Score = 89.7 bits (98), Expect = 6e-13 Identities = 309/478 (65%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 ||||||||| | ||||| ||| | || ||||| || ||| || || |||| Sbjct 3591 CCACATATCGTATTGGAGTTCTCCTAGACTAGCGGGCGAGCCGGGAAACGTTTCGTATGC 3532 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 ||| || | | || | ||| | || || |||||||| ||||| | ||| || || Sbjct 3531 GCCTTCCGACACTGCAAGCTCGTTGGAGGCTTCAAGGGCTGCATGATAGAGTGTCTCGAA 3472 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA-A 118521 || |||| |||| | ||||| || |||||| || | || | || | | | Sbjct 3471 GATCTGAGCGTTCAATTTTTTGGCTTCCAGGGAATCGAATGGAAG-CTTCAAGATTTGGA 3413 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | |||| || | || | || |||| || || || ||||||||||| || ||||| Sbjct 3412 AGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGATGTCTCATGTTGGACTTTT 3353 Query 118582 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 ||| ||||| || ||||| ||| || | | ||| | || ||||| Sbjct 3352 TAGCTTCAGGGACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACGTGACTT 3293 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 ||||||| | || || ||||||| | ||||| | || || | || ||| |||| Sbjct 3292 CCTTTGTCACCTCGTGTAGCTTTTGGAAATCATA-----GACTC-CGTCGGTGATATACG 3239 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 | || || ||||| || ||||| || || || | |||||| | | ||||| | Sbjct 3238 TCGGCAGCGCGATCGAGGCCAGGTTGCAAACCGCCACCTCATCTGGGGCTGAATACTCGA 3179 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 | || || ||||| | |||||| ||| ||||| || | |||||||||||| || || Sbjct 3178 TGATCTCAGTGCAAAGGTTTGATGACTTGATGGTACCAAGGTTCTTTTGATTCGATTT 3121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618245997481000