Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12187 84.2 3e-11 seq4231 84.2 3e-11 >seq12187 Length=3801 Score = 84.2 bits (92), Expect = 3e-11 Identities = 311/479 (65%), Gaps = 20/479 (4%) Strand=Plus/Plus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||||||||| | ||| |||||| || || || || || || ||| | || | | Sbjct 3127 AATCAAAAGAACCTTGGTACCATCAAGTCATCAAACCTTTGCACTGAGATCATCGAGTAT 3186 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||||||| ||| || || ||||| || || ||||| || || | |||| | Sbjct 3187 TCAGCCCCAGATGAGGTGGCGGTTTGCAACCTGGCCTCGATCGCGCTGCCGACGTATAT- 3245 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 || ||| || | | ||||| |||| || ||||| || || || ||||| Sbjct 3246 ----CACCGACGGAGTC-TATGATTTCCAAAAGCTACACGAGGTGACAAAGGAAGTCACG 3300 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA 105202 ||| | || | | |||||| |||| |||||||| ||| ||| || Sbjct 3301 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTCCCTGA---AGCTAAAAAG 3357 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC--A 105260 || || |||||||| ||||| || || |||| || | || | || |||| ||| | Sbjct 3358 TCCAACATGAGACATCGTCCCATCGGAATCGGAGTAAACGGATTAGCAGATGCCTTCCAA 3417 Query 105261 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 || ||| || | |||| |||||| ||||| || || | || || | || || | Sbjct 3418 ATC-TTGAAGCTTC-CATTCGATTCCCTGGAAGCCAAAAAATTGAACGCTCAGATCTTCG 3475 Query 105321 AGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCC 105378 |||| | ||||| || || ||||| || | || ||| | |||| | || || | Sbjct 3476 AGACACTCTATCATGCAGCCCTTGAAGC--CTCCAACGAGCTTGCAGTGTCGGAAGGCGC 3533 Query 105379 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 ||| ||||| ||| || || || ||| | ||| | || |||| |||||||||| Sbjct 3534 ATACGAAACGTTTCCCGGCTCGCCCGCTAGTCTAGGAGAACTCCAATACGATATGTGGG 3592 >seq4231 Length=3588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 |||||| ||||||||| | ||||||||||||||| || | |||||| ||| | ||| Sbjct 1436 TTGGACAGCTGAAGAGATCGATCTCTCAAAGGATATGCATGATTGGGAGA-ACAGGTTGA 1494 Query 94500 A-AATGAAAAGAAA---TTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAA 94555 | |||| ||||| ||||| ||| || || | || |||||||||| || ||||||| Sbjct 1495 ACGATGACGAGAAACACTTCATCAAACACGTCTTAGCTTTCTTTGCTGCTTCAGATGGAA 1554 Query 94556 TTGTTTTTGAGAATATCAAT-AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGA 94614 | || ||||| | | | || | | || || ||||| ||| | | ||||| || Sbjct 1555 TCGTCAACGAGAACTTGATTGAAAGATTCAGCGGA-GAGGTTCAAGCGGCAGAAGCCCGA 1613 Query 94615 TCCTTCTATGCGTATCAG 94632 | |||||||| | |||| Sbjct 1614 TGCTTCTATGGCTTTCAG 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583082358649000