Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20allii-populina_20[genbank_20GCA_5F002157005.1_202017- 05-22] 24,475 sequences; 44,530,309 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13424 154 4e-32 seq13614 145 2e-29 seq20299 116 1e-20 seq18203 107 6e-18 seq12028 107 6e-18 seq12406 105 2e-17 seq15554 91.5 4e-13 seq13927 87.8 5e-12 seq6678 86.0 2e-11 >seq13424 Length=872 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||||||||| | || |||||||| || || || || || || || || | Sbjct 559 TTTGCATTCCACCACGTAAACGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATGTTGT 618 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | ||| || || || || ||||| |||||||||||||| | |||||| |||| Sbjct 619 AATCCGCGAGTGTGCGACCGTCCTCCAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGAT 678 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || ||||||||||| || || ||||| ||||| | || || | Sbjct 679 CTGGCGGGATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCGGAGG 738 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||| ||||| ||||| | ||| || || || ||| Sbjct 739 ATTCGACTTCCAGTGTGATTGTTTTGCCAGTCAGT 773 Score = 145 bits (160), Expect = 2e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| || || |||| | || | ||||||||||||||| ||||| || || ||||||| Sbjct 279 ACCTCCGCGCAATCGCAATACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGC 338 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | |||||| ||||| || |||||||| || ||||||||||| || || || ||||| || Sbjct 339 AAGTGTTCGTCCATCCTCCAGTTGTTTACCGGCAAAGATTAGTCGCTGTTGGTCAGGGGG 398 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| ||||||||||| || ||||| || || ||||| | || || | || || Sbjct 399 AATACCTTCCTTATCCTGAATCTTGGCTTTGACGTTGTCAATTGTGTCCGAAGACTCGAC 458 Query 140690 TTC 140692 ||| Sbjct 459 TTC 461 >seq13614 Length=15652 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || |||||| | || || || || |||||||||| ||| ||||||||||||||| Sbjct 830 GCTGTCGGTATCGATCTCGGAACCACCTACTCTTGTGTTGGTGTATGGCAAAATGATCGT 771 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| ||||| ||||| ||| |||| || || || ||||| || || || Sbjct 770 GTCGAAATCATTGCCAATGACCAAGGAAACCGAACCACCCCTTCTTACGTAGCTTTCACT 711 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | || || | ||||||||| | || ||||| |||| ||| ||||| | || Sbjct 710 GATTCCGAACGACTTATTGGTGATGCCGCCAAAAACCAAGTTGCAATGAATCCTCACAAC 651 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 || || || || || ||||| || |||||| Sbjct 650 ACCGTCTTCGACGCCAAGCGTCTGATTGGT 621 >seq20299 Length=5221 Score = 116 bits (128), Expect = 1e-20 Identities = 234/344 (68%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227 ||||| ||| || |||||| ||||| | ||| ||||| ||||| | | || || Sbjct 3940 GTTTCGTACCGTTCCATCATAAGCTACCATCACATCCTCTAACGCTTTCACCAATCTTCT 3999 Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287 |||||||| || | || || || || |||||||| ||||| ||||||| | Sbjct 4000 CTGGATATAACCTGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGC 4059 Query 378288 CATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAA 378347 ||| ||||| ||||| || || || || | ||| | || | | ||| |||||| ||| Sbjct 4060 CATAGCATGAAAGAAGAACTCCTGTGGTGTCAATCCCCGAAGATAAGAATTCTCAACAAA 4119 Query 378348 TCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAA 378407 ||| | | | ||||| | ||||| || || ||||||| || ||||||| || || Sbjct 4120 TCCACGAGATTCGGGCGAGTAATCATCCTTGGTGAAATGAGGCAAGGTACGATACTTGAA 4179 Query 378408 CCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAAC---CATTTG 378464 || || ||||||||||| || || || ||||| || | || || | |||||| Sbjct 4180 ACCGTAAGGAATTCGTTTACCCTCGACTGATTGTTGTCCGA---CACAAGCTGACATTTG 4236 Query 378465 AGCAATATT--TAAATCACTACCTTTAGACCCAGCATTAACCAT 378506 || || || | ||| | |||||| || ||||| | ||||| Sbjct 4237 AGAGATGTTGATGAATGA--ACCTTTCGAACCAGCCGTGACCAT 4278 >seq18203 Length=4728 Score = 107 bits (118), Expect = 6e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| ||||| || || || ||||| || ||||| || ||||||||| | | || Sbjct 2825 ATTGATGATGTAGTCTTGGTCGGGGGTTCCACCCGTATACCTAAAGTTCAAGAACTTCTC 2884 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||| || || ||||||||||| || | |||||| || |||||||||||||| Sbjct 2885 AAGGAGTACTTCAACGGCAAAGAACCCTCCAAGGGAATTAACCCCGATGAAGCTGTTGCG 2944 Query 350297 TATGGTGCTGCTGTTCA 350313 | ||||||||||||||| Sbjct 2945 TTTGGTGCTGCTGTTCA 2961 Score = 86.0 bits (94), Expect = 2e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 || |||||||||| |||||| | |||||||||||||| ||||||||| || || Sbjct 2966 CACCTTGAACAGCAGCACCAAACGCAACAGCTTCATCGGGGTTAATTCCCTTGGAGGGTT 2907 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 ||||||| || || | || || | || ||||| ||| || || | || ||||| | Sbjct 2906 CTTTGCCGTTGAAGTACTCCTTGAGAAGTTCTTGAACTTTAGGTATACGGGTGGAACCCC 2847 Query 183370 CGACTAATACTACTTCATCGAT 183391 |||| || ||||| ||||| || Sbjct 2846 CGACCAAGACTACATCATCAAT 2825 >seq12028 Length=2947 Score = 107 bits (118), Expect = 6e-18 Identities = 331/501 (66%), Gaps = 16/501 (3%) Strand=Plus/Minus Query 266921 AGATGGTTATAATTTTGCAAAAGTTCGTCTAAGAACATTACGCCAACCAGTAATCGGCGA 266980 |||||| | || |||| ||||||| | | ||| | | | ||| | || || || Sbjct 1206 AGATGGATTAAAATTTGTAAAAGTTAGAATTAGATCTACAAGAATACCTGAAACAGGAGA 1147 Query 266981 TAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTAT-TCCTGAAGAAA 267039 ||||||| | | | || |||||||||||||| | || | |||| | ||||| Sbjct 1146 TAAATTTGCATCTAGACATGGACAAAAAGGTACAGTAGGGATT-TTATATAGACAAGAAG 1088 Query 267040 ATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTC 267099 |||||||||||| || |||||| | || ||||| |||||||||||||||||||| | Sbjct 1087 ATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCC 1028 Query 267100 CTAGTCGTATGACAATTGGTCAATTAAAAGAGACACTTTTAGGAAAAGTTTTATTAGAAT 267159 | |||||||| || || || ||| || | ||| | ||||||| || ||| Sbjct 1027 CATCACGTATGACGATCGGACATTTAGTTGAATGTTTATTAAGTAAAGTTT--CTACAAT 970 Query 267160 --TAGGTTTATTTGGTGATGGTACTAGTTTTGGTGAATTTAATATAAAAGATATTTGTAA 267217 ||| ||||||| ||| || |||| | | | || ||| |||| Sbjct 969 CACAGGAAATGAAGGTGATGCTACACCATTCAGTGATGTGACTGTAGAAGCGATTT---C 913 Query 267218 AGAATTAC---AAAATATTGGTTATGAATCTAAAGGTAATGAAATATTATATGATGGATT 267274 ||| |||| | | | ||| ||| |||||| |||| ||||| | ||| |||| | Sbjct 912 AGACTTACTTAAGACAAATGGATATCAATCTAGAGGTTTAGAAATCATGTATAATGG-TC 854 Query 267275 AT-CTGGTGAACAGATGAGAAC-AAATGTATTTATCGGGCCAGCATTTTATCAAAGATTA 267332 || | || | | | ||| | ||||| | | | || || | | ||||||||||||| Sbjct 853 ATACAGGACGAAAACTTAGAGCTCAATGT-TATCTTGGTCCTACTTATTATCAAAGATTA 795 Query 267333 AAACATATGGTTAGTGATAAACAACATAGTAGAAGTATTGGTCCTATGGTAAATTTAACT 267392 ||||||||||| | ||||||| ||| ||| || |||||| | | |||||| Sbjct 794 AAACATATGGTGAATGATAAAATTCATTCTAGGGCTAGAGGTCCTGTACAGATCTTAACT 735 Query 267393 CGTCAACCAGCGGAAGGTAGA 267413 | ||||| | ||||||||| Sbjct 734 AGGCAACCGGTTGAAGGTAGA 714 Score = 87.8 bits (96), Expect = 5e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 251155 TTCTAATAATTGTCCAATGGTCATTCTACTAGGCAATGCGTGTGGATTAATAATAATATC 251214 ||| | ||| ||||| || ||||| | || | || || ||||||||||| ||||| Sbjct 996 TTCAACTAAATGTCCGATCGTCATACGTGATGGGATAGCATGAGGATTAATAATGATATC 1055 Query 251215 TGGACGAATTCCATCTTCAGTAAAAGGCATATTTTTCTCATCAATAACTAAA---CCAAT 251271 |||| |||||| || ||||| |||||| | |||| || ||| |||| || | Sbjct 1056 CGGACAAATTCCTTCAGATGTAAATGGCATA-TCTTCTTGTCTATA--TAAAATCCCTAC 1112 Query 251272 AGTACCTTTTTGTCCACATCTACTACAAAACTTATCTCCAATTGCAGGAATTCTTTCATC 251331 ||||||||||||||| |||| ||| |||||||| || |||| |||||| | Sbjct 1113 TGTACCTTTTTGTCCATGTCTAGATGCAAATTTATCTCCTGTTTCAGGTATTCTTGTAGA 1172 Query 251332 ACGAACTCTTACTTTTGCTAACCGAAATCCTTCTT 251366 | || ||| |||||| | || ||||| |||| Sbjct 1173 TCTAATTCTAACTTTTACAAATTTTAATCCATCTT 1207 >seq12406 Length=8609 Score = 105 bits (116), Expect = 2e-17 Identities = 257/387 (66%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956 || || ||||| || ||| | | ||||| | | |||||||||| |||||||||||| Sbjct 4771 GAGATCAAAGTAGCTCAACTGGGAGGTTACTGTGCCGAACATTCAGCCTATCATCACGGA 4712 Query 67957 GAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAAT 68016 ||| ||| | | | | ||||| | | || || || ||||| ||| ||||| Sbjct 4711 GAACAAAGTCTTACACAAACGATTGTCGCCCTCGCACAAAACTTTGTCGGAAGCAATAAC 4652 Query 68017 ATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATGCT 68076 || || | || ||| || || |||||||| || ||| | ||| || |||||||| Sbjct 4651 ATCAACGTTCTTTCACCTAATGGACAATTTGGTACAAGAGCAAATGGTGGTAAAGATGCA 4592 Query 68077 GCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGACAA 68136 || |||| ||| ||||| ||||| || | | | | || || ||||| | Sbjct 4591 GCCTCTGCAAGGTATATCTTTACCAATATTGAAAAGATTACCAGGGCGATCTTCCCGCCT 4532 Query 68137 GAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCTA 68195 ||||||| | || ||||| |||||| ||||| || | | || | || || | Sbjct 4531 CAAGATGACCACGTT-TTGAATTATTTAACTGATGACGGAGCTCAAATCGAACCTGAATG 4473 Query 68196 TTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGATT 68255 ||||| ||| | | || ||| | ||||| || || |||| || ||||| || |||| Sbjct 4472 GTATGTACCTGTCTTACCGATGGTCTTAGTGAACGGATCAAGTGGAATTGGGACAGGATG 4413 Query 68256 TAGTACAGATATTATGTGTTATAATCC 68282 ||| ||||||| | ||||||||| Sbjct 4412 GAGTTCAGATATACCGAATTATAATCC 4386 >seq15554 Length=1095 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 390772 ATATATGGGATGGAAACGGTTCAAGAGATTT-TTTAGATAGTAGAGGCTTAACTAATTTA 390830 |||| ||| ||||||| || || | ||| || |||| |||||| || ||||| | | Sbjct 311 ATATTTGGAATGGAAATGGATCTA-AGACTTATTTAAATAGTATTGGATTAACAGAAAGA 253 Query 390831 GAAGAAGATGATTTAGGGCCAGTATATGGACATCAATGGAGACATTTTAATGCACCATAT 390890 ||||| |||||||| || | |||||| |||||||||||||||| |||| |||| Sbjct 252 TCAGAAGGAGATTTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATAT 193 Query 390891 ACAAACTGTGAAACA-GACTATACAGATAAAGGTGTAGATCAATTAGAATATATTATT 390947 | ||||| | ||| | || ||| | |||||| | ||||||||| || || |||| Sbjct 192 A-AAACTTTTAAAGATGATTATTATCAAAAAGGTTTTGATCAATTAAAAGATTGTATT 136 >seq13927 Length=3443 Score = 87.8 bits (96), Expect = 5e-12 Identities = 192/283 (68%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 349609 TGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGC 349668 ||| ||||| ||||| ||||| || || || || || || || || || |||||||| Sbjct 3006 TGCAGTTATCACTGTCCCAGCTTACTTCAACGACGCTCAACGACAAGCCACGAAAGATGC 3065 Query 349669 TGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAAT 349728 ||| |||||| | | | ||| | | | || || |||||||| ||||| || | Sbjct 3066 TGGTGCCATTGCCAAGCTTGAAGTTTTGCGGGTCATCAACGAACCCACAGCTGCCGCCTT 3125 Query 349729 TGCATATGGGCTTGAT-AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 || || || |||||| | |||||| | | || ||| | ||| ||| | | Sbjct 3126 GGCCTACGGTCTTGATCGAGATGAGT---CTCGTCAA----ATTGCTGTTTACGATCTGG 3178 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG-AGGGAATTTTTGAAGTTAAA 349846 | |||||||| |||||||| ||| | || | || || |||| | || || || ||| Sbjct 3179 GAGGTGGTACCTTTGATGTCTCAATTCT-CGAGATGCAGAAGGGTGTATTCGAGGTCAAA 3237 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 |||| || || || ||||| ||||| ||||||||||||| Sbjct 3238 TCAACCAACGGAGACACCCATCTCGGTGGTGAAGATTTTGATA 3280 >seq6678 Length=1983 Score = 86.0 bits (94), Expect = 2e-11 Identities = 244/374 (65%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 350270 TCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCT 350329 || ||||| || ||||| |||||||| || ||||| ||||| ||||| |||| | || Sbjct 540 TCTATTAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATCCTTTCC 599 Query 350330 GGAAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 || ||| ||| || | | | ||||| | || | ||||| | || || ||| Sbjct 600 GGCGATAC---TTCCGAGAAGACTCAAGATCTTCTTCTCTTGGATGTTGCACCTCTCTCG 656 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 || || | || || | |||| || | ||| ||| || || |||| | || | Sbjct 657 CTGGGTATCGAGACAGCCGGTGGTGTCTTTACTCCTCTCATCCCCCGAAACACAACCATT 716 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 |||| |||| |||| || || || | | | || || || || | || | ||| Sbjct 717 CCTAACCGCAAGTGTGAAACATTCTCAACTTATACCGACAACCAACCTGGTGTCAACATT 776 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 ||||| || || |||||||||||||| || || || || | | || |||| Sbjct 777 CAAGTTTTCGAGGGTGAACGTGCTCGTACGAAGGACAACCACCTCTTGGGTAAATTCGAA 836 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 || | || ||||| || ||| | || |||||||| || |||||| |||||||| | Sbjct 837 CTCACTGGTATTCCTCCTGCCCCTCGTGGTGTTCCTCAAATCGAAGTCACTTTCGATGTG 896 Query 350627 GATTCAAATGGTAT 350640 ||| | || || || Sbjct 897 GATGCCAACGGCAT 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514779237528425